SRR2933064.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933064.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2692719
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50173	1.8632839148830607	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	16667	0.6189654397655306	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	11449	0.4251836155202232	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	10241	0.3803218976803744	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	6676	0.24792783799572105	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	5685	0.2111248890062424	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	5488	0.20380886382871735	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	5367	0.19931526460800403	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4738	0.17595597609702313	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4493	0.16685736610466967	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	3148	0.11690785410583132	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	15500	43.90774	1
CGCACTT	6770	41.583458	34
CCGCACT	6830	41.319183	33
CACTTAC	6850	41.164963	36
ACCCGCA	6940	41.028816	31
ACTTACT	6875	40.948364	37
GCACTTA	6875	40.948364	35
TATGACC	7180	40.938717	27
CCCGCAC	6990	40.932762	32
TACGGGA	1125	40.88889	3
TTATGAC	7340	40.57902	26
CTTATGA	7325	40.567917	25
CAACGCA	7475	40.553844	16
CGTAGGG	1140	40.55263	2
CGCAAGC	7465	40.546547	19
ATCAACG	7495	40.507004	14
AACGCAA	7490	40.441925	17
TCAACGC	7520	40.43351	15
CTTACTG	6990	40.406296	38
GGACTTA	7890	40.37389	7