SRR2933062.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933062.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1070272
Sequences flagged as poor quality	0
Sequence length	52
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	15745	1.471121359803863	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14045	1.3122832326735634	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	8212	0.7672815882317766	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	2425	0.2265779166417509	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCTT	2364	0.220878430903546	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	2154	0.20125725049333254	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA	1804	0.16855528314297674	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	1724	0.1610805477486097	No Hit
GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1424	0.1330502900197333	No Hit
GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCGGCAGACTTCG	1247	0.11651243795969622	No Hit
GGGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	1195	0.11165385995335765	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	1163	0.10866396579561083	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAT	20	6.3112576E-4	46.000004	46
CGGCGAT	20	6.3112576E-4	46.000004	19
GTCGCGC	20	6.3112576E-4	46.000004	10
ACCGGTA	20	6.3112576E-4	46.000004	27
TACCCGT	40	5.6115823E-9	46.000004	12
GCGACTA	40	5.6115823E-9	46.000004	33
CCCTCGC	20	6.3112576E-4	46.000004	37
TCCGCAT	20	6.3112576E-4	46.000004	25
GGTCGCG	20	6.3112576E-4	46.000004	9
CGAGTAC	20	6.3112576E-4	46.000004	12
CCGATAT	20	6.3112576E-4	46.000004	11
CGGCCGT	20	6.3112576E-4	46.000004	21
GCGAAAC	20	6.3112576E-4	46.000004	46
CCGGCTA	20	6.3112576E-4	46.000004	43
GACGTTC	20	6.3112576E-4	46.000004	19
TTTCGCA	20	6.3112576E-4	46.000004	36
CGCATTA	20	6.3112576E-4	46.000004	39
CGGTTCT	20	6.3112576E-4	46.000004	32
CGGTTCG	20	6.3112576E-4	46.000004	30
GACCGTA	20	6.3112576E-4	46.000004	8