##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933061.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 912466 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.500200555417955 33.0 31.0 34.0 31.0 34.0 2 32.8761641529657 34.0 31.0 34.0 31.0 34.0 3 32.88846378933571 34.0 31.0 34.0 31.0 34.0 4 36.3436971898131 37.0 37.0 37.0 35.0 37.0 5 36.20956506872585 37.0 37.0 37.0 35.0 37.0 6 36.30465244732407 37.0 37.0 37.0 35.0 37.0 7 36.5411752328306 37.0 37.0 37.0 35.0 37.0 8 36.50104223061462 37.0 37.0 37.0 35.0 37.0 9 38.30935289643669 39.0 39.0 39.0 37.0 39.0 10 38.01686309407693 39.0 39.0 39.0 35.0 39.0 11 37.72629445919081 39.0 38.0 39.0 35.0 39.0 12 37.360497815809026 39.0 37.0 39.0 35.0 39.0 13 37.28307027330333 39.0 37.0 39.0 35.0 39.0 14 38.01664719562154 41.0 37.0 41.0 33.0 41.0 15 38.326408874412856 41.0 37.0 41.0 33.0 41.0 16 38.556476624882464 41.0 37.0 41.0 34.0 41.0 17 38.6131614767016 41.0 37.0 41.0 35.0 41.0 18 38.52539382289313 40.0 37.0 41.0 35.0 41.0 19 38.44270581040828 40.0 37.0 41.0 35.0 41.0 20 38.25008055094656 40.0 35.0 41.0 34.0 41.0 21 38.213076432436935 40.0 35.0 41.0 34.0 41.0 22 38.17153954229527 40.0 35.0 41.0 34.0 41.0 23 38.17468157717657 40.0 35.0 41.0 34.0 41.0 24 38.154698366843256 40.0 35.0 41.0 34.0 41.0 25 38.013071171966956 40.0 35.0 41.0 34.0 41.0 26 37.93596802510998 40.0 35.0 41.0 34.0 41.0 27 37.84261112194865 40.0 35.0 41.0 34.0 41.0 28 37.818317614026164 40.0 35.0 41.0 34.0 41.0 29 37.76882316710979 40.0 35.0 41.0 34.0 41.0 30 37.70850749507379 40.0 35.0 41.0 34.0 41.0 31 37.556978561392974 40.0 35.0 41.0 34.0 41.0 32 37.409005924604315 40.0 35.0 41.0 33.0 41.0 33 37.25907485867967 40.0 35.0 41.0 33.0 41.0 34 37.05219701336817 40.0 35.0 41.0 33.0 41.0 35 36.92911187923714 40.0 35.0 41.0 32.0 41.0 36 36.84183081890175 40.0 35.0 41.0 32.0 41.0 37 36.7487829683517 40.0 35.0 41.0 32.0 41.0 38 36.71028838334798 40.0 35.0 41.0 32.0 41.0 39 36.633018654941665 40.0 35.0 41.0 31.0 41.0 40 36.56316290141222 40.0 35.0 41.0 31.0 41.0 41 36.42884008828822 40.0 35.0 41.0 31.0 41.0 42 36.46675602159423 39.0 35.0 41.0 31.0 41.0 43 36.44614484265715 39.0 35.0 41.0 31.0 41.0 44 36.42498131437226 39.0 35.0 41.0 31.0 41.0 45 36.352589575940364 39.0 35.0 41.0 31.0 41.0 46 36.30216468339642 39.0 35.0 41.0 31.0 41.0 47 36.22561936554348 39.0 35.0 41.0 31.0 41.0 48 36.118226870919024 39.0 35.0 41.0 31.0 41.0 49 36.094606264781376 39.0 35.0 41.0 31.0 41.0 50 35.99343427590727 38.0 35.0 41.0 30.0 41.0 51 35.92221189611448 38.0 35.0 41.0 30.0 41.0 52 35.68762890891277 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 6.0 14 2.0 15 16.0 16 44.0 17 98.0 18 199.0 19 374.0 20 588.0 21 962.0 22 1660.0 23 2652.0 24 4629.0 25 7575.0 26 10035.0 27 10927.0 28 11216.0 29 11457.0 30 12525.0 31 14791.0 32 18164.0 33 25444.0 34 67012.0 35 89554.0 36 50696.0 37 60663.0 38 101540.0 39 406480.0 40 3151.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.166572781889954 21.970681647316173 25.523471559488243 14.339274011305628 2 39.565967389469854 22.35075060331015 25.065043519429764 13.01823848779023 3 33.47291844298856 22.798767296534887 30.622401273033734 13.105912987442819 4 29.38630042105678 26.3226246238216 30.360912077819886 13.93016287730173 5 25.768083413518973 30.399708043916156 29.779301365749518 14.052907176815355 6 27.550396398331557 36.9944743146594 26.87190536414508 8.583223922863976 7 86.3921505020461 1.6975974995232699 10.160707357863197 1.7495446405674293 8 85.10958216525329 1.9796902021554776 10.321370878476568 2.589356754114674 9 79.19155343870347 4.391177315099959 12.277827338224109 4.139441907972461 10 44.48308210936079 28.905296197337766 16.82912020831461 9.782501484986836 11 30.08977868764425 23.15165715763656 31.30713911532046 15.451425039398728 12 30.31948587673404 17.756826007763575 34.17245135709166 17.751236758410723 13 31.332235940846015 17.49917257190953 35.524392141734594 15.64419934550986 14 19.209921246380688 20.203273327444528 40.939059647153975 19.647745779020806 15 15.748532000096441 27.056788965287478 39.70328757455072 17.491391460065362 16 30.266990770067046 23.93908375764138 30.69155453463471 15.102370937656856 17 27.890683050108166 21.553898994592675 28.779702476585427 21.775715478713728 18 23.111655667170066 22.001806094692846 36.225020987083354 18.661517251053738 19 23.091380939125404 23.64888116379131 31.03775921513788 22.22197868194541 20 18.500634544191236 34.650825345821104 29.281091021473678 17.567449088513985 21 23.658744545002225 24.495488051061628 36.4043153388729 15.441452065063247 22 20.149463103282752 20.93886237952976 39.5645426788505 19.34713183833699 23 20.299057718314984 21.89856937135192 38.27627549958026 19.526097410752836 24 21.672697941621934 26.453807593926786 32.0497421273779 19.82375233707338 25 23.69052655112629 24.770128421223365 32.54532223666416 18.994022790986183 26 18.788645275549992 28.004221527158276 28.5117472870222 24.695385910269533 27 21.888705990141002 24.08977430391927 34.018144237703105 20.003375468236626 28 17.45818474332194 27.431816637551425 30.08462781078966 25.025370808336966 29 21.583708324474557 28.782880677197838 29.046123362404735 20.587287635922873 30 25.966775748356653 23.313197423246454 29.427617029018066 21.292409799378824 31 23.723733267869708 24.256246260134624 32.59288565272569 19.427134819269977 32 26.636718518827003 24.235204380218004 27.661743012890344 21.466334088064652 33 26.463670975137703 24.192463061637365 29.8919630978031 19.451902865421836 34 20.612165275199295 24.743935664452156 34.07863964246339 20.56525941788516 35 23.343006753128336 29.241308717256313 28.073374788759253 19.3423097408561 36 26.238676290404246 25.897512893631102 26.275609173382897 21.58820164258175 37 21.95796884486655 29.177415925634488 27.167697207348002 21.696918022150964 38 25.30198385474089 25.805235482746752 29.453919378913845 19.438861283598513 39 21.40211251706913 27.87676472328832 26.212702719882163 24.508420039760388 40 26.41490203470595 25.617283274116513 28.43930623168425 19.528508459493285 41 21.579543785741055 25.409275523690745 26.476164591338197 26.535016099229995 42 20.173025625064387 26.506083514344642 31.10143282051057 22.219458040080397 43 20.103653177214273 26.388818871059307 31.302426610964133 22.205101340762287 44 24.920271001878426 23.90850727588754 28.048606742607397 23.122614979626636 45 20.882641106627535 23.874204627898465 27.333511604815957 27.90964266065804 46 23.124806842117955 24.385566147122194 28.958010490253884 23.531616520505967 47 19.882932624338878 24.23630031146366 32.19648732117142 23.68427974302604 48 20.097406369114026 29.18607378247518 29.266515135906435 21.450004712504356 49 24.15388628179023 25.17639013398855 29.283502070214123 21.386221514007097 50 21.900432454469538 25.336724875228228 28.633505248414735 24.129337421887502 51 21.43378493006863 25.936089673478246 27.168573952344527 25.461551444108604 52 21.770455008734572 26.30519931701565 28.371029715079793 23.553315959169986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 509.0 1 1594.5 2 2680.0 3 12301.0 4 21922.0 5 12880.5 6 3839.0 7 3931.5 8 4024.0 9 4568.5 10 5113.0 11 5595.0 12 6077.0 13 6085.0 14 5960.0 15 5827.0 16 5595.5 17 5364.0 18 5072.0 19 4780.0 20 4709.5 21 4639.0 22 4845.0 23 5051.0 24 5538.5 25 6026.0 26 6971.5 27 7917.0 28 9463.0 29 11009.0 30 11957.0 31 12905.0 32 14646.5 33 16388.0 34 18331.0 35 20274.0 36 21983.5 37 23693.0 38 25553.0 39 29065.5 40 30718.0 41 32541.5 42 34365.0 43 36609.0 44 38853.0 45 42502.0 46 46151.0 47 52301.0 48 58451.0 49 71181.5 50 83912.0 51 82263.0 52 80614.0 53 80470.0 54 80326.0 55 71652.5 56 62979.0 57 57905.0 58 52831.0 59 53848.0 60 54865.0 61 40890.0 62 26915.0 63 23371.0 64 16899.0 65 13971.0 66 11807.0 67 9643.0 68 7539.5 69 5436.0 70 4965.5 71 4495.0 72 3573.5 73 2652.0 74 2130.0 75 1608.0 76 1270.0 77 932.0 78 787.5 79 643.0 80 482.0 81 321.0 82 257.5 83 194.0 84 159.0 85 124.0 86 83.5 87 43.0 88 31.5 89 22.5 90 25.0 91 15.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 912466.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.054636424080662 #Duplication Level Percentage of deduplicated Percentage of total 1 71.86364865011109 21.598358322869636 2 10.4686053023148 6.292602524565486 3 3.834152061987454 3.457021386530163 4 1.9806771369692746 2.3811412490040222 5 1.367380623167835 2.0548063741321063 6 0.9886804530544807 1.7828658933688661 7 0.8151420897020052 1.7149159397971379 8 0.6631177284802611 1.5943809788669188 9 0.5788080117442852 1.565627791708755 >10 7.217621602179344 45.4965485933978 >50 0.18373559550339727 3.305233688153073 >100 0.028548553269448232 1.7770839440301007 >500 0.006222120584366729 1.313205083493099 >1k 0.0025620496523863006 1.176032463362768 >5k 3.6600709319804293E-4 0.825345764906075 >10k+ 7.320141863960859E-4 3.664830001814047 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17229 1.8881799431430872 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 16087 1.763024594889015 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 7503 0.8222772136167265 No Hit GGGGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCT 2391 0.2620371608366777 Illumina PCR Primer Index 8 (95% over 21bp) GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCAGGGAAGCTCG 1832 0.20077460420443063 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA 1377 0.1509097325270202 No Hit GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1311 0.14367658630568153 No Hit CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCTT 1305 0.1430190275582871 Illumina PCR Primer Index 8 (96% over 25bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG 1294 0.141813503188064 No Hit GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCAGGGAAGCT 1181 0.12942948011213568 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1477315319146138 0.0 2 0.0 0.0 0.0 0.4061521196406222 0.0 3 0.0 0.0 0.0 0.6618328792524872 0.0 4 0.0 0.0 0.0 0.951816286853428 0.0 5 0.0 0.0 0.0 2.0076364489197407 0.0 6 0.0 0.0 0.0 2.7724868652640207 0.0 7 0.0 0.0 0.0 3.2672998226783245 0.0 8 0.0 0.0 0.0 4.296488855475163 0.0 9 0.0 0.0 0.0 4.834591097092932 0.0 10 0.0 0.0 0.0 5.711884059241659 0.0 11 0.0 0.0 0.0 7.111826632444387 0.0 12 0.0 0.0 0.0 8.047642323111218 0.0 13 0.0 0.0 0.0 8.50826222566101 0.0 14 0.0 0.0 0.0 9.02093886237953 0.0 15 0.0 0.0 0.0 9.40604910210353 0.0 16 0.0 0.0 0.0 9.91741062132726 0.0 17 0.0 0.0 0.0 10.504720175875047 0.0 18 0.0 0.0 0.0 11.22913072925457 0.0 19 0.0 0.0 0.0 11.655995949438116 0.0 20 0.0 0.0 0.0 12.251305802079202 0.0 21 0.0 0.0 0.0 12.769352501901441 0.0 22 0.0 0.0 0.0 13.345483557743522 0.0 23 0.0 0.0 0.0 13.881941902492805 0.0 24 0.0 0.0 0.0 14.294012050859978 0.0 25 0.0 0.0 0.0 14.742795895956672 0.0 26 0.0 0.0 0.0 15.136673585645932 0.0 27 0.0 0.0 0.0 15.74984711759123 0.0 28 0.0 0.0 0.0 16.220220808227374 0.0 29 0.0 0.0 0.0 16.779364929761766 0.0 30 0.0 0.0 0.0 18.071906240890073 0.0 31 0.0 0.0 0.0 18.607159061269133 0.0 32 0.0 0.0 0.0 19.065258321953912 0.0 33 0.0 0.0 0.0 19.554482030015365 0.0 34 0.0 0.0 0.0 20.08962525726986 0.0 35 0.0 0.0 0.0 20.585205366556124 0.0 36 0.0 0.0 0.0 20.965383915674668 0.0 37 0.0 0.0 0.0 21.483978581119736 0.0 38 0.0 0.0 0.0 22.017916284004006 0.0 39 0.0 0.0 0.0 23.604495948342183 0.0 40 0.0 0.0 0.0 24.147310694316282 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATAG 35 1.0192525E-7 46.000004 1 GCACGAT 25 3.4165983E-5 46.0 41 ACTAGCG 20 6.3107663E-4 46.0 1 ACTACGG 40 5.6097633E-9 46.0 2 TCGACGT 20 6.3107663E-4 46.0 26 AATCGCG 20 6.3107663E-4 46.0 1 TACCGGT 25 3.4165983E-5 46.0 40 CGTTTTT 5140 0.0 44.16537 1 CGTAAGG 115 0.0 44.000004 2 TACGGGA 195 0.0 43.641026 4 CGTTAGG 90 0.0 43.444447 2 GCAAGGC 1835 0.0 42.866486 46 TAAGTAG 110 0.0 41.81818 1 CTACGGG 110 0.0 41.81818 3 ACGGGAC 160 0.0 41.6875 5 GCGGGAT 585 0.0 41.28205 5 CGATAGG 145 0.0 41.24138 2 ATAGGGA 730 0.0 40.958904 4 AAGGGAT 1410 0.0 40.78014 5 TAGACGA 85 0.0 40.588234 18 >>END_MODULE