SRR2933058.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933058.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1792384
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33213	1.8530069449403699	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	17128	0.9555988002570878	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	10517	0.5867604263372134	No Hit
GGGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	5992	0.33430336356495033	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	2379	0.13272825465971577	No Hit
CGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	2180	0.12162572305934442	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCTT	2163	0.12067726558594585	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	2104	0.11738556023709204	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA	1948	0.10868206812825823	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	55	1.8189894E-12	46.000004	1
TTACGCG	30	1.8619903E-6	46.0	1
ACGTATA	25	3.4179262E-5	46.0	36
CGTTTTT	9955	0.0	44.428932	1
GGCGATA	80	0.0	43.125004	8
GTACGCG	65	0.0	42.46154	1
CCATACG	175	0.0	42.057144	2
CATACGA	835	0.0	41.868263	18
CGTTAGG	220	0.0	41.818184	2
TAGGGAT	1625	0.0	40.338463	5
GCGAGAC	1015	0.0	40.334976	21
CGACCAA	985	0.0	40.162434	29
ACGACCA	995	0.0	39.527637	28
ACATACG	885	0.0	39.502827	17
GGGCGAT	1095	0.0	39.488586	7
GCAAGGC	2105	0.0	39.44418	46
TACGAAA	895	0.0	39.318436	20
CGAATAT	240	0.0	39.291668	14
ACAACGA	335	0.0	39.134327	13
ACACGAC	1005	0.0	39.134327	26