SRR2933055.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933055.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1492037
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49817	3.3388582186634785	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	12346	0.8274593726563081	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	8364	0.5605759106510093	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	7797	0.5225741720882257	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	6074	0.40709446213465217	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTT	5472	0.3667469372408325	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	4099	0.27472509059761924	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3804	0.25495346295031557	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3211	0.21520914025590518	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAAT	3140	0.2104505451272321	No Hit
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2928	0.19624178220781388	TruSeq Adapter, Index 16 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	2900	0.19436515314298505	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	2307	0.15462083044857466	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTC	2004	0.13431302306846277	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1670	0.11192751922371898	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	15205	0.0	45.10753	1
ACTACGG	85	0.0	43.294117	1
TATACGG	85	0.0	43.294117	1
TACGGGA	510	0.0	42.843132	3
CGGTCTA	700	0.0	42.714287	30
TCACGAC	695	0.0	42.690647	24
CACGACG	705	0.0	42.411346	25
CGCACTT	4960	0.0	42.336693	34
CATGCGG	185	0.0	42.27027	1
ACTTACT	4935	0.0	42.224922	37
ACGGGTA	115	0.0	42.0	4
CCGCACT	5000	0.0	41.998	33
CACTTAC	4990	0.0	41.98998	36
CCCGCAC	5085	0.0	41.974434	32
GCACTTA	5005	0.0	41.910088	35
CTTACTG	4975	0.0	41.885426	38
CGACGGT	725	0.0	41.875866	27
TTTACGG	55	4.7293724E-11	41.818184	1
GTAACGG	110	0.0	41.818184	1
TTATGAC	5320	0.0	41.633457	26