##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933052.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1000500 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47639780109945 33.0 31.0 34.0 31.0 34.0 2 32.786659670164916 34.0 31.0 34.0 31.0 34.0 3 32.80941329335332 34.0 31.0 34.0 31.0 34.0 4 36.29526936531734 37.0 37.0 37.0 35.0 37.0 5 36.276185907046475 37.0 37.0 37.0 35.0 37.0 6 36.45296151924038 37.0 37.0 37.0 35.0 37.0 7 36.54228985507246 37.0 37.0 37.0 35.0 37.0 8 36.38382808595702 37.0 37.0 37.0 35.0 37.0 9 37.99967416291854 39.0 38.0 39.0 35.0 39.0 10 37.86590004997501 39.0 38.0 39.0 35.0 39.0 11 37.37070964517741 39.0 35.0 39.0 35.0 39.0 12 37.18306646676662 39.0 35.0 39.0 34.0 39.0 13 36.86403998001 39.0 35.0 39.0 33.0 39.0 14 38.38262668665667 40.0 37.0 41.0 33.0 41.0 15 38.54699850074962 40.0 37.0 41.0 35.0 41.0 16 38.602757621189404 40.0 36.0 41.0 35.0 41.0 17 38.643988005997 40.0 36.0 41.0 35.0 41.0 18 38.53256371814093 40.0 36.0 41.0 35.0 41.0 19 38.35090554722639 40.0 36.0 41.0 35.0 41.0 20 38.23767516241879 40.0 35.0 41.0 35.0 41.0 21 38.2375952023988 40.0 35.0 41.0 35.0 41.0 22 38.20181209395302 40.0 35.0 41.0 35.0 41.0 23 38.12782408795602 40.0 35.0 41.0 34.0 41.0 24 38.03943828085957 40.0 35.0 41.0 34.0 41.0 25 37.97209295352324 40.0 35.0 41.0 34.0 41.0 26 37.901416291854076 40.0 35.0 41.0 34.0 41.0 27 37.82767816091954 40.0 35.0 41.0 34.0 41.0 28 37.79918740629685 40.0 35.0 41.0 34.0 41.0 29 37.731167416291854 40.0 35.0 41.0 34.0 41.0 30 37.595647176411795 40.0 35.0 41.0 34.0 41.0 31 37.49985707146427 40.0 35.0 41.0 34.0 41.0 32 37.396354822588705 40.0 35.0 41.0 34.0 41.0 33 37.192708645677165 39.0 35.0 41.0 33.0 41.0 34 37.010980509745124 39.0 35.0 41.0 33.0 41.0 35 36.88931634182909 39.0 35.0 41.0 33.0 41.0 36 36.79345427286357 39.0 35.0 41.0 33.0 41.0 37 36.68384607696152 39.0 35.0 41.0 32.0 41.0 38 36.69944527736132 39.0 35.0 41.0 33.0 41.0 39 36.601790104947526 39.0 35.0 41.0 32.0 41.0 40 36.514854572713645 39.0 35.0 41.0 32.0 41.0 41 36.52053773113443 39.0 35.0 41.0 32.0 41.0 42 36.496763618190904 39.0 35.0 41.0 32.0 41.0 43 36.41128535732134 38.0 35.0 41.0 32.0 41.0 44 36.32197101449275 38.0 35.0 41.0 32.0 41.0 45 36.26042678660669 38.0 35.0 41.0 32.0 41.0 46 36.159022488755625 38.0 35.0 41.0 31.0 41.0 47 36.03664467766117 38.0 35.0 41.0 31.0 41.0 48 35.99688155922039 38.0 35.0 41.0 31.0 41.0 49 35.920286856571714 37.0 35.0 41.0 31.0 41.0 50 35.79860469765117 37.0 35.0 40.0 31.0 41.0 51 35.69268165917042 37.0 35.0 40.0 30.0 41.0 52 35.439264367816094 37.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 0.0 12 2.0 13 3.0 14 2.0 15 10.0 16 14.0 17 78.0 18 193.0 19 291.0 20 557.0 21 854.0 22 1414.0 23 2363.0 24 4231.0 25 7158.0 26 9410.0 27 10395.0 28 10379.0 29 10999.0 30 12686.0 31 15725.0 32 20298.0 33 28579.0 34 70421.0 35 126109.0 36 77994.0 37 79142.0 38 117734.0 39 387508.0 40 5949.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.580509745127436 22.818290854572716 25.26166916541729 18.33953023488256 2 30.578010994502748 23.04297851074463 26.057471264367816 20.321539230384808 3 26.981709145427285 24.186606696651676 28.305647176411796 20.526036981509247 4 22.886356821589203 26.98150924537731 27.2031984007996 22.928935532233883 5 20.771714142928534 37.45537231384308 23.832183908045977 17.94072963518241 6 84.17251374312843 2.4642678660669666 11.057371314342829 2.305847076461769 7 86.74192903548226 1.8009995002498753 8.135932033983009 3.3211394302848576 8 78.72983508245876 3.9258370814592705 12.724737631184407 4.619590204897552 9 40.583108445777114 29.664767616191906 16.27656171914043 13.475562218890555 10 34.06926536731634 20.33373313343328 28.484657671164413 17.112343828085958 11 32.126336831584204 20.14942528735632 30.24247876061969 17.48175912043978 12 23.39480259870065 28.714442778610692 32.84977511244378 15.040979510244878 13 16.344127936031985 34.92823588205897 33.44457771114443 15.283058470764619 14 14.522138930534734 30.30064967516242 39.042578710644676 16.13463268365817 15 18.785007496251875 22.90494752623688 40.52883558220889 17.78120939530235 16 18.906746626686658 25.77131434282859 27.691254372813596 27.63068465767116 17 21.291254372813594 29.27626186906547 29.675462268865566 19.757021489255372 18 23.33743128435782 33.645577211394304 26.822288855572214 16.194702648675662 19 20.00759620189905 30.328435782108947 26.22278860569715 23.44117941029485 20 19.465167416291855 30.241779110444778 31.026986506746628 19.266066966516743 21 16.449175412293854 26.554822588705644 31.470164917541226 25.52583708145927 22 13.96601699150425 32.43228385807097 28.75162418790605 24.85007496251874 23 14.364617691154422 34.874362818590704 32.224787606196905 18.536231884057973 24 22.736531734132935 28.368115942028986 28.320839580209896 20.574512743628187 25 14.506246876561718 31.789105447276363 26.612493753123438 27.09215392303848 26 13.964217891054473 30.419590204897553 33.44177911044478 22.1744127936032 27 17.797401299350323 28.40209895052474 33.77051474262869 20.02998500749625 28 14.947326336831585 33.33753123438281 28.267666166916545 23.447476261869067 29 19.89735132433783 28.772913543228384 32.43008495752124 18.899650174912544 30 27.453073463268368 28.176511744127936 25.806396801599202 18.564017991004498 31 23.769415292353823 32.78270864567716 24.822588705647178 18.62528735632184 32 22.962418790604698 27.867666166916543 23.896451774112943 25.273463268365816 33 20.07936031984008 27.263968015992003 28.405597201399303 24.251074462768614 34 16.636781609195403 29.730434782608693 28.549625187406296 25.0831584207896 35 30.303948025987005 27.96531734132934 23.343228385807098 18.387506246876562 36 19.90104947526237 31.420689655172414 24.634682658670666 24.04357821089455 37 21.869965017491253 31.53233383308346 26.45957021489255 20.138130934532732 38 19.22838580709645 27.48165917041479 24.574912543728136 28.715042478760623 39 24.894652673663167 25.285657171414293 28.263668165917043 21.556021989005497 40 18.269065467266365 23.696451774112944 32.4063968015992 25.62808595702149 41 19.411794102948527 30.6023988005997 26.636981509245377 23.348825587206395 42 19.857471264367817 25.501549225387304 28.600199900049976 26.040779610194903 43 21.866266866566715 28.249675162418793 28.781209395302348 21.102848575712144 44 19.35232383808096 30.806196901549228 24.2367816091954 25.604697651174412 45 22.777011494252875 27.69535232383808 26.647776111944026 22.879860069965016 46 24.05417291354323 27.528235882058972 28.076861569215396 20.34072963518241 47 19.13943028485757 31.225087456271865 28.455372313843082 21.180109945027485 48 20.267866066966516 27.427786106946527 26.93053473263368 25.373813093453272 49 18.760919540229885 27.386206896551723 30.269765117441278 23.583108445777114 50 18.257971014492753 28.065267366316842 30.318540729635185 23.358220889555223 51 18.758920539730134 26.190904547726134 27.490454772613692 27.559720139930032 52 19.512043978010997 24.464667666166918 30.599600199900053 25.423688155922036 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1722.0 1 1611.0 2 1500.0 3 11641.0 4 21782.0 5 12426.5 6 3071.0 7 3780.5 8 4490.0 9 6262.5 10 8035.0 11 9747.5 12 11460.0 13 11867.5 14 11689.5 15 11104.0 16 9564.5 17 8025.0 18 7068.5 19 6112.0 20 5680.0 21 5248.0 22 4963.0 23 4678.0 24 4864.0 25 5050.0 26 5349.0 27 5648.0 28 6335.5 29 7023.0 30 7880.0 31 8737.0 32 10069.0 33 11401.0 34 13370.5 35 15340.0 36 17203.0 37 19066.0 38 20667.5 39 23567.0 40 24865.0 41 32464.0 42 40063.0 43 50660.5 44 61258.0 45 67331.0 46 73404.0 47 78785.5 48 84167.0 49 106492.5 50 128818.0 51 125735.5 52 122653.0 53 105426.0 54 88199.0 55 74036.5 56 59874.0 57 52081.5 58 44289.0 59 38381.0 60 32473.0 61 25107.0 62 17741.0 63 15136.0 64 9473.5 65 6416.0 66 5079.5 67 3743.0 68 2720.0 69 1697.0 70 1660.5 71 1624.0 72 1523.0 73 1422.0 74 1012.5 75 603.0 76 486.0 77 369.0 78 245.0 79 121.0 80 89.5 81 58.0 82 39.0 83 20.0 84 35.0 85 50.0 86 27.0 87 4.0 88 2.5 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1000500.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.322326609140042 #Duplication Level Percentage of deduplicated Percentage of total 1 71.85841182308904 21.789142329137963 2 12.07942031702491 7.325522562038225 3 4.78828850957937 4.355761442587742 4 2.42774425954221 2.944594174452149 5 1.4895071424245903 2.258266102962265 6 0.953140622705623 1.7340864759671413 7 0.7084685037658847 1.503768935443454 8 0.540309934343526 1.3106763439461926 9 0.4077728198565507 1.1128158563418322 >10 3.8378435605622387 24.722834649584584 >50 0.7458458394365346 15.770923988010347 >100 0.14969785517059245 7.346869971206675 >500 0.008591929877335426 1.7309033262762212 >1k 0.003635047255795757 2.194441521677043 >5k 9.913765243079339E-4 1.896037555852649 >10k+ 3.3045884143597786E-4 2.0033547645154854 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19993 1.9983008495752124 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 7797 0.7793103448275862 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5645 0.5642178910544727 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5480 0.5477261369315342 No Hit CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCTT 3163 0.31614192903548227 Illumina Single End Adapter 2 (95% over 24bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3112 0.31104447776111943 No Hit CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 2427 0.24257871064467768 TruSeq Adapter, Index 22 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 2315 0.23138430784607694 TruSeq Adapter, Index 22 (96% over 25bp) TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2278 0.22768615692153926 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG 2177 0.21759120439780108 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1596 0.15952023988005998 No Hit ACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 1442 0.144127936031984 Illumina Single End Adapter 2 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 1205 0.12043978010994504 Illumina Single End Adapter 2 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 1101 0.11004497751124437 No Hit GCCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 1084 0.10834582708645678 TruSeq Adapter, Index 22 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.33323338330834584 0.0 2 0.0 0.0 0.0 0.9997001499250375 0.0 3 0.0 0.0 0.0 1.8467766116941529 0.0 4 0.0 0.0 0.0 2.4267866066966515 0.0 5 0.0 0.0 0.0 5.452373813093454 0.0 6 0.0 0.0 0.0 6.107046476761619 0.0 7 0.0 0.0 0.0 7.730134932533733 0.0 8 0.0 0.0 0.0 9.95632183908046 0.0 9 0.0 0.0 0.0 11.616591704147925 0.0 10 0.0 0.0 0.0 13.110544727636182 0.0 11 0.0 0.0 0.0 14.64447776111944 0.0 12 0.0 0.0 0.0 15.679160419790104 0.0 13 0.0 0.0 0.0 16.14062968515742 0.0 14 0.0 0.0 0.0 16.423788105947025 0.0 15 0.0 0.0 0.0 17.284457771114443 0.0 16 0.0 0.0 0.0 18.4431784107946 0.0 17 0.0 0.0 0.0 19.718740629685158 0.0 18 0.0 0.0 0.0 20.397801099450273 0.0 19 0.0 0.0 0.0 21.062368815592205 0.0 20 0.0 0.0 0.0 21.856671664167916 0.0 21 0.0 0.0 0.0 22.676661669165416 0.0 22 0.0 0.0 0.0 23.49165417291354 0.0 23 0.0 0.0 0.0 24.115742128935533 0.0 24 0.0 0.0 0.0 24.60199900049975 0.0 25 0.0 0.0 0.0 25.110844577711145 0.0 26 0.0 0.0 0.0 25.736031984007997 0.0 27 0.0 0.0 0.0 26.271664167916043 0.0 28 0.0 0.0 0.0 26.87646176911544 0.0 29 0.0 0.0 0.0 27.417391304347827 0.0 30 0.0 0.0 0.0 27.971714142928537 0.0 31 0.0 0.0 0.0 28.426586706646678 0.0 32 9.995002498750625E-5 0.0 0.0 28.93743128435782 0.0 33 9.995002498750625E-5 0.0 0.0 29.53823088455772 0.0 34 9.995002498750625E-5 0.0 0.0 30.268565717141428 0.0 35 9.995002498750625E-5 0.0 0.0 30.785907046476762 0.0 36 9.995002498750625E-5 0.0 0.0 31.329735132433782 0.0 37 9.995002498750625E-5 0.0 0.0 31.972613693153423 0.0 38 9.995002498750625E-5 0.0 0.0 33.404997501249376 0.0 39 9.995002498750625E-5 0.0 0.0 34.00649675162419 0.0 40 9.995002498750625E-5 0.0 0.0 34.50974512743628 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTAGCG 35 1.01939804E-7 46.000004 31 CCATCGT 35 1.01939804E-7 46.000004 41 GATATCG 35 1.01939804E-7 46.000004 10 CTTCGAG 25 3.416837E-5 46.0 28 TTAGGCG 25 3.416837E-5 46.0 1 CGAACGT 25 3.416837E-5 46.0 37 CGTATCA 20 6.311062E-4 46.0 43 CGCGGAT 20 6.311062E-4 46.0 3 TCCGAAC 25 3.416837E-5 46.0 35 TTTCGTG 20 6.311062E-4 46.0 31 GACGTTA 20 6.311062E-4 46.0 19 CAGTTCG 20 6.311062E-4 46.0 12 TAGCGCC 25 3.416837E-5 46.0 33 TTCACGG 65 0.0 46.0 1 CTCCCGC 20 6.311062E-4 46.0 37 ATTCGTT 20 6.311062E-4 46.0 42 CGTTAAT 20 6.311062E-4 46.0 21 GGGCGTA 55 1.8189894E-12 46.0 6 ACTACGG 65 0.0 46.0 1 GGACGCG 25 3.416837E-5 46.0 7 >>END_MODULE