##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933047.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 595592 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.494773267606014 33.0 31.0 34.0 31.0 34.0 2 32.88004540020685 34.0 31.0 34.0 31.0 34.0 3 32.866913927655176 34.0 31.0 34.0 31.0 34.0 4 36.33691352469476 37.0 37.0 37.0 35.0 37.0 5 36.21079363053903 37.0 37.0 37.0 35.0 37.0 6 36.298783395344465 37.0 37.0 37.0 35.0 37.0 7 36.52763301051726 37.0 37.0 37.0 35.0 37.0 8 36.49094514365539 37.0 37.0 37.0 35.0 37.0 9 38.30907231796263 39.0 39.0 39.0 37.0 39.0 10 37.99826559121009 39.0 39.0 39.0 35.0 39.0 11 37.66428192453895 39.0 37.0 39.0 35.0 39.0 12 37.26877123937192 39.0 35.0 39.0 35.0 39.0 13 37.16594581525608 39.0 35.0 39.0 34.0 39.0 14 37.84499120203092 40.0 37.0 41.0 32.0 41.0 15 38.18358540746014 40.0 37.0 41.0 33.0 41.0 16 38.45451584306035 41.0 37.0 41.0 34.0 41.0 17 38.50870898198767 41.0 36.0 41.0 35.0 41.0 18 38.382768741017344 40.0 36.0 41.0 35.0 41.0 19 38.26648779701541 40.0 36.0 41.0 35.0 41.0 20 38.030114575078244 40.0 35.0 41.0 34.0 41.0 21 37.99654461443404 40.0 35.0 41.0 34.0 41.0 22 37.96358413141883 40.0 35.0 41.0 34.0 41.0 23 37.9391596932128 40.0 35.0 41.0 34.0 41.0 24 37.88200479522895 40.0 35.0 41.0 34.0 41.0 25 37.72339789654663 40.0 35.0 41.0 34.0 41.0 26 37.630267028435576 40.0 35.0 41.0 34.0 41.0 27 37.51798210855753 39.0 35.0 41.0 34.0 41.0 28 37.46911140512297 39.0 35.0 41.0 34.0 41.0 29 37.39552411718089 39.0 35.0 41.0 34.0 41.0 30 37.31017038509584 39.0 35.0 41.0 33.0 41.0 31 37.11069154723368 39.0 35.0 41.0 33.0 41.0 32 36.9121814933713 39.0 35.0 41.0 33.0 41.0 33 36.72514405834867 39.0 35.0 41.0 32.0 41.0 34 36.45234993082513 39.0 35.0 41.0 31.0 41.0 35 36.32289218122473 39.0 35.0 41.0 31.0 41.0 36 36.230385901758254 39.0 35.0 41.0 31.0 41.0 37 36.07885767438112 39.0 35.0 41.0 30.0 41.0 38 36.029051766981425 39.0 35.0 41.0 30.0 41.0 39 35.99518966003573 39.0 35.0 41.0 30.0 41.0 40 35.90334826525541 39.0 35.0 41.0 30.0 41.0 41 35.73157967199022 39.0 35.0 41.0 28.0 41.0 42 35.78045541242999 39.0 35.0 41.0 29.0 41.0 43 35.74191728565864 38.0 35.0 41.0 29.0 41.0 44 35.69943854182058 38.0 35.0 41.0 29.0 41.0 45 35.64435553197491 38.0 35.0 41.0 29.0 41.0 46 35.60875062123064 38.0 35.0 41.0 29.0 41.0 47 35.51317176859327 38.0 35.0 41.0 29.0 41.0 48 35.3772213192924 37.0 35.0 41.0 28.0 41.0 49 35.348559080712974 37.0 35.0 41.0 28.0 41.0 50 35.24679478569222 37.0 35.0 40.0 27.0 41.0 51 35.16531618960631 37.0 35.0 40.0 27.0 41.0 52 34.90454539349085 36.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 0.0 11 0.0 12 1.0 13 3.0 14 9.0 15 10.0 16 49.0 17 76.0 18 179.0 19 301.0 20 554.0 21 880.0 22 1415.0 23 2267.0 24 3783.0 25 6258.0 26 8312.0 27 8810.0 28 8795.0 29 8694.0 30 9030.0 31 10587.0 32 12754.0 33 17642.0 34 47473.0 35 62534.0 36 38572.0 37 41478.0 38 66308.0 39 237502.0 40 1314.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.18732958132413 21.898044298781716 26.426815672473776 17.487810447420383 2 40.64712084782872 22.67961960536743 23.87775524184341 12.795504304960442 3 31.63004204220339 22.27145428414082 32.55466829641768 13.543835377238109 4 28.677349595024783 25.227840535131435 31.818929737135488 14.275880132708297 5 24.795665489126783 29.69012344020739 31.414122419374337 14.100088651291486 6 27.27941275235396 35.370857902725355 28.727551746833402 8.622177598087282 7 83.76724334779514 1.7374309930287848 12.716423323348868 1.7789023358272107 8 82.55416459589786 1.9832368467004258 12.922436835954814 2.5401617214468963 9 77.18270225254872 3.913920939166409 14.682366452202178 4.2210103560826875 10 47.085252991981086 22.02682373168209 19.71970745073809 11.168215825598732 11 30.72254160566294 23.48033553170627 31.307002108826175 14.490120753804616 12 30.067730929898318 18.375666563687894 34.34935324853255 17.207249257881234 13 29.098611129766688 18.945351851603114 37.405136402100766 14.550900616529436 14 18.26619565071391 20.55299601069188 42.86038093191312 18.320427406681084 15 14.907520584561244 26.987602251205523 41.21563083453102 16.88924632970221 16 28.672480489999863 24.348043627181024 32.39449153111526 14.58498435170385 17 26.802744160431974 22.4915714113017 30.089054251903992 20.616630176362342 18 22.871361603245173 23.07720721567785 36.36818493196685 17.68324624911013 19 22.26742467998227 24.625246813254712 31.85519617456245 21.252132332200567 20 17.18743703743502 35.49728673319991 30.47807895337748 16.837197275987588 21 22.81192494190654 24.976493975741786 37.64221144676221 14.569369635589464 22 19.043069752447987 21.65526064822899 41.207403726040646 18.09426587328238 23 19.96232320111754 22.754838882993727 39.01143735980335 18.271400556085375 24 20.88711735550511 27.76229365068705 33.00867036494782 18.341918628860025 25 23.49393544574138 25.155139760104234 33.4816451530578 17.86927964109659 26 17.74016440784967 28.17280957433948 29.777767330655884 24.309258687154966 27 21.305356687128103 24.445761528025898 35.13059275477172 19.11828903007428 28 16.443471369662454 27.896781689478704 31.055487649263252 24.60425929159559 29 20.329688780238822 28.31082351676987 30.244529812354763 21.114957890636543 30 25.190902497011376 23.250983895015377 30.397654770379724 21.16045883759352 31 21.971248774328735 24.37709035715725 34.07181426211232 19.5798466064017 32 24.95768915633521 23.644206100820696 28.857338580773416 22.540766162070682 33 26.041820575158837 23.427111176778734 30.624487904471522 19.906580343590914 34 19.0168773254174 23.484533036038094 36.2224475815659 21.276142056978603 35 20.133077677336164 29.055124984888987 28.976715603970504 21.835081733804348 36 25.20584561243267 25.746652070544933 27.912564305766363 21.134938011256025 37 19.469871992907898 29.443813886015928 29.525245470053324 21.561068651022847 38 22.856754288170425 25.941584171714865 30.412429985627742 20.789231554486964 39 20.64181520235329 27.009597173904282 28.20219210466225 24.146395519080173 40 25.299030208599177 25.203830810353395 29.61305726067509 19.884081720372336 41 19.348480167631532 25.91186584104555 27.95823315289661 26.781420838426307 42 18.07327835162326 27.20671197732676 33.95730634394015 20.762703327109833 43 19.072955983290573 26.421107066582493 32.94151029563863 21.564426654488308 44 23.73184999126919 25.188551894585554 29.076280406721377 22.003317707423875 45 19.429408051149107 24.39119397171218 28.388897097341804 27.79050087979691 46 22.03135703636046 24.076884847345163 29.671822321320633 24.21993579497374 47 18.13153971174898 25.024513425297854 33.48668215825599 23.357264704697176 48 18.378688766806807 30.3518180230762 29.945499603755593 21.3239936063614 49 23.17106341253744 25.65380327472498 30.403363376271002 20.771769936466576 50 20.300977850609144 25.596549315638896 29.930052787814475 24.172420045937486 51 19.947212185522975 26.485244932772773 28.77758599846875 24.789956883235504 52 19.820447554701875 27.345061720103697 29.432732474579915 23.401758250614517 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 559.0 1 1711.5 2 2864.0 3 10545.5 4 18227.0 5 10802.0 6 3377.0 7 3506.0 8 3635.0 9 4280.0 10 4925.0 11 5611.5 12 6298.0 13 6384.0 14 6189.5 15 5909.0 16 5436.5 17 4964.0 18 4859.5 19 4755.0 20 4483.5 21 4212.0 22 4174.5 23 4137.0 24 4293.5 25 4450.0 26 5079.0 27 5708.0 28 6652.5 29 7597.0 30 8289.0 31 8981.0 32 9913.0 33 10845.0 34 11857.0 35 12869.0 36 13434.0 37 13999.0 38 15604.0 39 17379.5 40 17550.0 41 19277.5 42 21005.0 43 23136.0 44 25267.0 45 27569.5 46 29872.0 47 33091.5 48 36311.0 49 42388.0 50 48465.0 51 49499.5 52 50534.0 53 50406.0 54 50278.0 55 45359.5 56 40441.0 57 37055.0 58 33669.0 59 34390.5 60 35112.0 61 26455.0 62 17798.0 63 14921.0 64 10475.0 65 8906.0 66 7327.5 67 5749.0 68 4763.0 69 3777.0 70 3306.5 71 2836.0 72 2247.5 73 1659.0 74 1293.0 75 927.0 76 799.0 77 671.0 78 482.5 79 294.0 80 277.5 81 261.0 82 174.5 83 88.0 84 49.5 85 11.0 86 27.0 87 43.0 88 29.0 89 10.0 90 5.0 91 7.5 92 10.0 93 6.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 595592.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.93181487405774 #Duplication Level Percentage of deduplicated Percentage of total 1 72.87878834642477 24.000307660700972 2 9.469464511440567 6.236933044944407 3 3.725607881578711 3.680730871484416 4 1.9831017621622766 2.6122856043178313 5 1.3347151900431258 2.197729677404651 6 1.0838429341233589 2.1415748915463606 7 0.8735242555156166 2.0136717349447575 8 0.7865545482293729 2.0722135016510266 9 0.6955994113161166 2.0616615935969307 >10 7.0838787654626865 43.1085318981578 >50 0.046042261646453114 0.9816910295059815 >100 0.02967167972768145 2.087378042829628 >500 0.0061389682195203 1.3548582905920796 >1k 0.0020463227398401 1.2209224113306143 >5k 0.0 0.0 >10k+ 0.00102316136992005 4.229509746992559 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14535 2.4404290185227473 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 10570 1.774704831495386 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 3338 0.5604507783852033 No Hit GGGGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCT 1576 0.2646106730782146 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCG 1284 0.21558382248250482 No Hit GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCCGTCGCATTCG 1049 0.1761272817633548 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA 915 0.15362865854477561 No Hit GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 901 0.1512780561189539 No Hit CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 768 0.12894733307364772 No Hit GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCCGTCGCATT 765 0.1284436325538288 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 645 0.10829561176107134 No Hit TGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 632 0.10611290950852262 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCC 629 0.10560920898870368 No Hit CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 604 0.10141170465687921 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09620679928541687 0.0 2 0.0 0.0 0.0 0.3707235825867372 0.0 3 0.0 0.0 0.0 0.6665636878937259 0.0 4 0.0 0.0 0.0 1.023183655925533 0.0 5 0.0 0.0 0.0 2.174139343711803 0.0 6 0.0 0.0 0.0 3.043190640572741 0.0 7 0.0 0.0 0.0 3.62933014546871 0.0 8 0.0 0.0 0.0 4.697343147658128 0.0 9 0.0 0.0 0.0 5.326968797431799 0.0 10 0.0 0.0 0.0 6.151526548375398 0.0 11 0.0 0.0 0.0 7.498421738371234 0.0 12 0.0 0.0 0.0 8.327176993646658 0.0 13 0.0 0.0 0.0 8.715362194253785 0.0 14 0.0 0.0 0.0 9.132929925183683 0.0 15 0.0 0.0 0.0 9.44337734556542 0.0 16 0.0 0.0 0.0 9.84465875968784 0.0 17 0.0 0.0 0.0 10.32267055299601 0.0 18 0.0 0.0 0.0 10.929461779204557 0.0 19 0.0 0.0 0.0 11.276847237706349 0.0 20 0.0 0.0 0.0 11.783905760990745 0.0 21 0.0 0.0 0.0 12.206846297465379 0.0 22 1.6790017327297883E-4 0.0 0.0 12.671761877258257 0.0 23 1.6790017327297883E-4 0.0 0.0 13.094198713213071 0.0 24 1.6790017327297883E-4 0.0 0.0 13.43906566911577 0.0 25 1.6790017327297883E-4 0.0 0.0 13.805927547717229 0.0 26 1.6790017327297883E-4 0.0 0.0 14.13971309218391 0.0 27 1.6790017327297883E-4 0.0 0.0 14.681191150989267 0.0 28 1.6790017327297883E-4 0.0 0.0 15.060813442759473 0.0 29 1.6790017327297883E-4 0.0 0.0 15.553096750795847 0.0 30 3.3580034654595765E-4 0.0 0.0 16.487461215059973 0.0 31 3.3580034654595765E-4 0.0 0.0 16.950026192427032 0.0 32 3.3580034654595765E-4 0.0 0.0 17.300265953874465 0.0 33 3.3580034654595765E-4 0.0 0.0 17.720016387056912 0.0 34 3.3580034654595765E-4 0.0 0.0 18.16411234536394 0.0 35 3.3580034654595765E-4 0.0 0.0 18.593433088422948 0.0 36 3.3580034654595765E-4 0.0 0.0 18.918991524399253 0.0 37 3.3580034654595765E-4 0.0 0.0 19.334208652903328 0.0 38 3.3580034654595765E-4 0.0 0.0 19.796605730097113 0.0 39 3.3580034654595765E-4 0.0 0.0 21.263213743636584 0.0 40 5.037005198189364E-4 0.0 0.0 21.6856505795914 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTACG 20 6.308992E-4 46.000004 1 ACCGGTA 20 6.308992E-4 46.000004 41 CGAAATG 20 6.308992E-4 46.000004 46 ACGGGCA 40 5.6043064E-9 46.000004 5 TATAGCG 35 1.0184522E-7 46.000004 1 TATCGCG 20 6.308992E-4 46.000004 1 TAAGACG 35 1.0184522E-7 46.000004 1 CAATAAG 20 6.308992E-4 46.000004 1 TAAACGG 25 3.41516E-5 46.0 2 ACGGGTC 30 1.8598821E-6 46.0 5 ACAGGCG 50 1.6370905E-11 46.0 33 ACGTCCC 25 3.41516E-5 46.0 43 CGTAAGG 50 1.6370905E-11 46.0 2 TCGAACC 25 3.41516E-5 46.0 14 TACGTAG 25 3.41516E-5 46.0 1 CGTTTTT 4370 0.0 44.05263 1 TACGGGA 95 0.0 43.57895 4 TAGGGAC 155 0.0 43.03226 5 TAGCGAG 75 0.0 42.933334 1 GGCACTA 60 1.8189894E-12 42.166668 8 >>END_MODULE