SRR2933046.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933046.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1489446
Sequences flagged as poor quality	0
Sequence length	52
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31033	2.0835263581224157	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	13810	0.9271903781674529	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	6774	0.4547999726072647	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	2209	0.14831017707254912	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	2014	0.1352180609434649	No Hit
GGGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	1903	0.1277656256084477	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	1797	0.12064888555879166	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	1635	0.10977235831309091	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA	1525	0.10238706203514596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	6.3120597E-4	46.0	36
GCGAACA	20	6.3120597E-4	46.0	9
ATTACGC	25	3.4176468E-5	46.0	33
TCGATCA	20	6.3120597E-4	46.0	41
TATTGCG	40	5.6134013E-9	46.0	1
AACGGTT	30	1.8617775E-6	46.0	41
CCGTACG	25	3.4176468E-5	46.0	1
CTACGTC	25	3.4176468E-5	46.0	13
CCGCGTG	20	6.3120597E-4	46.0	35
CGATCCG	20	6.3120597E-4	46.0	40
CCACGCG	20	6.3120597E-4	46.0	1
TATCGGC	20	6.3120597E-4	46.0	35
ATCGCTC	25	3.4176468E-5	46.0	31
TACCGTA	20	6.3120597E-4	46.0	43
TAGTACG	40	5.6134013E-9	46.0	1
ACGGTTC	20	6.3120597E-4	46.0	11
ACGGTAC	25	3.4176468E-5	46.0	32
GAATCGC	35	1.0198346E-7	45.999996	18
CGTTTTT	7810	0.0	44.704224	1
TTGCGAG	130	0.0	42.461536	1