FastQCFastQC Report
Sat 14 Jan 2017
SRR2933046.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933046.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1489446
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT310332.0835263581224157No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC138100.9271903781674529No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG67740.4547999726072647No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA22090.14831017707254912No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC20140.1352180609434649No Hit
GGGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT19030.1277656256084477No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT17970.12064888555879166No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT16350.10977235831309091No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA15250.10238706203514596No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCGA206.3120597E-446.036
GCGAACA206.3120597E-446.09
ATTACGC253.4176468E-546.033
TCGATCA206.3120597E-446.041
TATTGCG405.6134013E-946.01
AACGGTT301.8617775E-646.041
CCGTACG253.4176468E-546.01
CTACGTC253.4176468E-546.013
CCGCGTG206.3120597E-446.035
CGATCCG206.3120597E-446.040
CCACGCG206.3120597E-446.01
TATCGGC206.3120597E-446.035
ATCGCTC253.4176468E-546.031
TACCGTA206.3120597E-446.043
TAGTACG405.6134013E-946.01
ACGGTTC206.3120597E-446.011
ACGGTAC253.4176468E-546.032
GAATCGC351.0198346E-745.99999618
CGTTTTT78100.044.7042241
TTGCGAG1300.042.4615361