Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933046.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1489446 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31033 | 2.0835263581224157 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC | 13810 | 0.9271903781674529 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG | 6774 | 0.4547999726072647 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA | 2209 | 0.14831017707254912 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC | 2014 | 0.1352180609434649 | No Hit |
GGGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT | 1903 | 0.1277656256084477 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT | 1797 | 0.12064888555879166 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT | 1635 | 0.10977235831309091 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA | 1525 | 0.10238706203514596 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCGCGA | 20 | 6.3120597E-4 | 46.0 | 36 |
GCGAACA | 20 | 6.3120597E-4 | 46.0 | 9 |
ATTACGC | 25 | 3.4176468E-5 | 46.0 | 33 |
TCGATCA | 20 | 6.3120597E-4 | 46.0 | 41 |
TATTGCG | 40 | 5.6134013E-9 | 46.0 | 1 |
AACGGTT | 30 | 1.8617775E-6 | 46.0 | 41 |
CCGTACG | 25 | 3.4176468E-5 | 46.0 | 1 |
CTACGTC | 25 | 3.4176468E-5 | 46.0 | 13 |
CCGCGTG | 20 | 6.3120597E-4 | 46.0 | 35 |
CGATCCG | 20 | 6.3120597E-4 | 46.0 | 40 |
CCACGCG | 20 | 6.3120597E-4 | 46.0 | 1 |
TATCGGC | 20 | 6.3120597E-4 | 46.0 | 35 |
ATCGCTC | 25 | 3.4176468E-5 | 46.0 | 31 |
TACCGTA | 20 | 6.3120597E-4 | 46.0 | 43 |
TAGTACG | 40 | 5.6134013E-9 | 46.0 | 1 |
ACGGTTC | 20 | 6.3120597E-4 | 46.0 | 11 |
ACGGTAC | 25 | 3.4176468E-5 | 46.0 | 32 |
GAATCGC | 35 | 1.0198346E-7 | 45.999996 | 18 |
CGTTTTT | 7810 | 0.0 | 44.704224 | 1 |
TTGCGAG | 130 | 0.0 | 42.461536 | 1 |