Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933041.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2238082 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 19362 | 0.8651157553655318 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19089 | 0.8529178108755623 | No Hit |
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 13919 | 0.6219164445270549 | No Hit |
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 13678 | 0.6111482957282173 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCTT | 6334 | 0.2830101846134324 | Illumina Single End Adapter 1 (95% over 24bp) |
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT | 6132 | 0.2739845993131619 | Illumina Single End Adapter 1 (95% over 23bp) |
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 5194 | 0.23207371311685632 | No Hit |
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 5044 | 0.22537154581467525 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT | 4086 | 0.1825670373114122 | Illumina Single End Adapter 1 (95% over 23bp) |
ACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC | 3176 | 0.14190722234484707 | Illumina Single End Adapter 1 (95% over 22bp) |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2648 | 0.11831559344116971 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC | 2363 | 0.1055814755670257 | Illumina Single End Adapter 1 (95% over 22bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG | 2308 | 0.10312401422289265 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACTACGG | 140 | 0.0 | 46.000004 | 1 |
TATCCGT | 35 | 1.0201438E-7 | 46.000004 | 43 |
CGTATCG | 20 | 6.312743E-4 | 46.0 | 38 |
GGTCGTA | 20 | 6.312743E-4 | 46.0 | 8 |
GACCGTA | 40 | 5.6152203E-9 | 46.0 | 15 |
TACGCTT | 20 | 6.312743E-4 | 46.0 | 9 |
TGCGATT | 25 | 3.418202E-5 | 46.0 | 42 |
GTCGTAC | 20 | 6.312743E-4 | 46.0 | 15 |
GTATCGC | 20 | 6.312743E-4 | 46.0 | 39 |
ACGTCGT | 25 | 3.418202E-5 | 46.0 | 39 |
CGTAAGT | 20 | 6.312743E-4 | 46.0 | 16 |
CCGCGTA | 20 | 6.312743E-4 | 46.0 | 13 |
GTAAGCG | 25 | 3.418202E-5 | 46.0 | 17 |
TCACGTA | 25 | 3.418202E-5 | 46.0 | 14 |
ACGTAGG | 285 | 0.0 | 45.19298 | 1 |
ATTGCGG | 470 | 0.0 | 45.02128 | 1 |
AATGCGG | 230 | 0.0 | 45.0 | 1 |
CGACGGT | 635 | 0.0 | 44.913383 | 27 |
CACGACG | 660 | 0.0 | 43.560608 | 25 |
AGCTACG | 165 | 0.0 | 43.212124 | 9 |