SRR2933040.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933040.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3127703
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39196	1.2531880424707844	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	22408	0.7164363112482227	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	12145	0.3883041324575895	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	11640	0.37215809813144024	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	6635	0.21213651040396098	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5825	0.18623891079172158	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	3801	0.12152688410632338	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	3333	0.10656382655258508	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	3149	0.10068091503573069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCGA	20	6.3131296E-4	46.0	31
CGTTTTT	14285	0.0	43.32727	1
TACGGGA	985	0.0	42.26396	3
CGCACTT	8450	0.0	42.21657	34
CCGCACT	8485	0.0	42.150856	33
CGACGGT	620	0.0	41.919357	27
CCCGCAC	8625	0.0	41.81333	32
CAACGCA	9200	0.0	41.475	16
TATGACC	9020	0.0	41.4102	27
ACCCGCA	8710	0.0	41.405277	31
AACGCAA	9225	0.0	41.33767	17
GCACTTA	8685	0.0	41.100746	35
ACGCAAG	9285	0.0	41.095318	18
TCAACGC	9325	0.0	41.04236	15
CTTAATC	9710	0.0	41.02575	10
AGCTTAT	9225	0.0	40.839024	23
CGCAAGC	9335	0.0	40.825924	19
CGGTCTA	620	0.0	40.806454	30
CTAGCGG	825	0.0	40.70303	1
GGACTTA	9955	0.0	40.68609	7