SRR2933032.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933032.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2915941
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	18229	0.6251498229902457	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	10868	0.37270987307356357	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9947	0.3411248718681208	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	8707	0.29860000596719893	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5476	0.18779529489794206	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5383	0.1846059299553729	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	3247	0.11135341901636557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAA	30	1.862396E-6	46.0	46
GACGTAT	20	6.3130585E-4	46.0	41
TTACGAG	40	5.6170393E-9	46.0	11
CGATACG	85	0.0	43.294117	9
CGGTCTA	335	0.0	41.880596	30
GCGATAC	150	0.0	41.399998	8
TTACGGG	920	0.0	41.000004	2
TACGCGG	355	0.0	40.816902	1
CACTTAC	7415	0.0	40.540794	36
CGCACTT	7435	0.0	40.2152	34
GCACTTA	7520	0.0	39.88298	35
CCGCACT	7520	0.0	39.821808	33
GCGCGAC	1745	0.0	39.805157	8
CGTTTTT	5095	0.0	39.72522	1
AATACGG	180	0.0	39.61111	1
ACATACG	750	0.0	39.56	16
CCCGCAC	7715	0.0	39.50097	32
ACTTACT	7590	0.0	39.484848	37
CTTACTG	7590	0.0	39.484848	38
TACGAAA	780	0.0	39.21795	19