SRR2933029.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933029.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2708534
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49532	1.8287383507092767	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	14731	0.5438735493074852	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	9246	0.3413654766748359	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	9161	0.3382272476550045	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	5397	0.19925908258858852	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	4825	0.17814064730219373	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	4756	0.17559314374491883	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4713	0.17400556906429826	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	4522	0.16695378385503007	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4102	0.15144724046292202	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4048	0.1494535420267938	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	3654	0.1349069275113401	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTT	3482	0.12855662878885774	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGTAA	30	1.862345E-6	46.0	28
ATATACG	20	6.3129776E-4	46.0	29
CCGCGAA	20	6.3129776E-4	46.0	46
CGTTTTT	14810	0.0	44.151924	1
CGACGGT	695	0.0	43.683456	27
CGGTCTA	705	0.0	43.063828	30
TAATCGG	55	4.7293724E-11	41.81818	1
TCACGAC	760	0.0	41.460526	24
AATGCGG	350	0.0	41.4	1
CCGCACT	5940	0.0	41.314816	33
CGCACTT	5955	0.0	41.210747	34
CCCGCAC	6060	0.0	41.179867	32
CCAATCG	190	0.0	41.157894	23
TACGGGA	1080	0.0	41.101852	3
ACCCGCA	6045	0.0	41.09181	31
TAACGGG	845	0.0	40.8284	2
CAACGCA	6410	0.0	40.76131	16
TATCCGG	170	0.0	40.588234	1
TATGACC	6265	0.0	40.529926	27
TCAACGC	6540	0.0	40.408257	15