Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933028.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1863454 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19489 | 1.0458535601093453 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 10289 | 0.5521467125026965 | No Hit |
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 7976 | 0.42802237135985116 | No Hit |
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 7856 | 0.4215827168258513 | No Hit |
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 3290 | 0.17655386180716023 | No Hit |
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC | 3082 | 0.1653917939482273 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2650 | 0.14220903762582818 | No Hit |
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT | 2380 | 0.1277198149243287 | Illumina Single End Adapter 2 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCGCGA | 20 | 6.312469E-4 | 46.0 | 13 |
TAACGCG | 20 | 6.312469E-4 | 46.0 | 45 |
CTGCGTA | 20 | 6.312469E-4 | 46.0 | 36 |
CCCGTAG | 25 | 3.417979E-5 | 46.0 | 44 |
CATACCG | 20 | 6.312469E-4 | 46.0 | 14 |
TTAACGC | 20 | 6.312469E-4 | 46.0 | 36 |
CTATTCG | 25 | 3.417979E-5 | 46.0 | 20 |
CCGAATA | 25 | 3.417979E-5 | 46.0 | 28 |
TATTAGG | 255 | 0.0 | 44.19608 | 1 |
CTAACGG | 115 | 0.0 | 44.0 | 1 |
ATTCGGC | 100 | 0.0 | 43.7 | 16 |
GACCGAT | 500 | 0.0 | 42.780003 | 8 |
TACGGGA | 965 | 0.0 | 42.663208 | 3 |
CGTTTTT | 6520 | 0.0 | 42.57822 | 1 |
CGCACTT | 4460 | 0.0 | 42.441704 | 34 |
GCGTAGG | 495 | 0.0 | 42.282825 | 1 |
CGTAGGG | 1130 | 0.0 | 42.132744 | 2 |
ACCCGCA | 4540 | 0.0 | 41.896477 | 31 |
CCGCACT | 4525 | 0.0 | 41.832047 | 33 |
CCCGCAC | 4555 | 0.0 | 41.809002 | 32 |