FastQCFastQC Report
Sat 14 Jan 2017
SRR2933028.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933028.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1863454
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT194891.0458535601093453No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC102890.5521467125026965No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC79760.42802237135985116No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC78560.4215827168258513No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC32900.17655386180716023No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC30820.1653917939482273No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26500.14220903762582818No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT23800.1277198149243287Illumina Single End Adapter 2 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCGA206.312469E-446.013
TAACGCG206.312469E-446.045
CTGCGTA206.312469E-446.036
CCCGTAG253.417979E-546.044
CATACCG206.312469E-446.014
TTAACGC206.312469E-446.036
CTATTCG253.417979E-546.020
CCGAATA253.417979E-546.028
TATTAGG2550.044.196081
CTAACGG1150.044.01
ATTCGGC1000.043.716
GACCGAT5000.042.7800038
TACGGGA9650.042.6632083
CGTTTTT65200.042.578221
CGCACTT44600.042.44170434
GCGTAGG4950.042.2828251
CGTAGGG11300.042.1327442
ACCCGCA45400.041.89647731
CCGCACT45250.041.83204733
CCCGCAC45550.041.80900232