SRR2933028.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933028.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1863454
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19489	1.0458535601093453	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	10289	0.5521467125026965	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	7976	0.42802237135985116	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	7856	0.4215827168258513	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3290	0.17655386180716023	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3082	0.1653917939482273	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2650	0.14220903762582818	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT	2380	0.1277198149243287	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	6.312469E-4	46.0	13
TAACGCG	20	6.312469E-4	46.0	45
CTGCGTA	20	6.312469E-4	46.0	36
CCCGTAG	25	3.417979E-5	46.0	44
CATACCG	20	6.312469E-4	46.0	14
TTAACGC	20	6.312469E-4	46.0	36
CTATTCG	25	3.417979E-5	46.0	20
CCGAATA	25	3.417979E-5	46.0	28
TATTAGG	255	0.0	44.19608	1
CTAACGG	115	0.0	44.0	1
ATTCGGC	100	0.0	43.7	16
GACCGAT	500	0.0	42.780003	8
TACGGGA	965	0.0	42.663208	3
CGTTTTT	6520	0.0	42.57822	1
CGCACTT	4460	0.0	42.441704	34
GCGTAGG	495	0.0	42.282825	1
CGTAGGG	1130	0.0	42.132744	2
ACCCGCA	4540	0.0	41.896477	31
CCGCACT	4525	0.0	41.832047	33
CCCGCAC	4555	0.0	41.809002	32