FastQCFastQC Report
Thu 9 Feb 2017
SRR3211942.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211942.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1702780
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC18100.020.7486237
TATTCCG450.00382655420.5555555
CGACTTA500.00703623818.514
TTAGCCG1054.800622E-717.619054
GTATATG1054.800622E-717.619051
GTCTAGA2450.016.6122461
CTCGTTA2850.016.2280722
TTGTATA1151.2429773E-616.0869562
CTCGTAT1059.3482995E-615.85714429
GGCTAAC1353.9751103E-715.0740751
TCTTATA29650.014.97470537
TCGTAAG750.00410548614.7999992
TACCGTC908.2769006E-414.3888887
GCTATAT1051.6563693E-414.0952391
GTACCGT1203.302192E-513.8750016
ATCTATA1203.302192E-513.8750012
GAGTATA800.00630026513.8751
CGATCGT800.00630026513.87525
ATTATAC1356.570939E-613.7037043
CGGTCGT950.001245504613.63157917
Produced by FastQC (version 0.11.5)