FastQCFastQC Report
Thu 9 Feb 2017
SRR3211940.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211940.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4798377
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC33150.020.31372637
TCTTATA58550.016.5567937
TACTTAC5750.013.83478331
TAGACAG9000.012.7444455
GTAACGT2052.0703737E-812.63414726
TACGGAT9050.012.46961327
CTCTTAT90100.012.38124437
ATTACGC1359.9727964E-512.3333343
TAACCCG1205.126703E-412.3333335
TATACCG1653.8100625E-612.3333335
CTCGTTA5100.011.97058822
CGTTACG3103.6379788E-1211.93548324
GGTATCA53100.011.6365351
GTCTTAG8300.011.367471
ATTAGAC3451.8189894E-1211.260873
GTATTAA8400.011.2321421
TCGTTAC4300.011.18604723
ACCGTTA4500.011.18
CGATCGT3503.6379788E-1211.125
CTTAGAC7350.011.074833
Produced by FastQC (version 0.11.5)