##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3211940.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4798377 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.610501008986994 34.0 31.0 34.0 31.0 34.0 2 32.735935921666844 34.0 31.0 34.0 31.0 34.0 3 32.81618618128588 34.0 31.0 34.0 31.0 34.0 4 36.262386010936616 37.0 37.0 37.0 35.0 37.0 5 36.17100177830962 37.0 35.0 37.0 35.0 37.0 6 36.18951241221772 37.0 37.0 37.0 35.0 37.0 7 36.17511483570382 37.0 36.0 37.0 35.0 37.0 8 36.15882745353272 37.0 36.0 37.0 35.0 37.0 9 38.00959991263713 39.0 38.0 39.0 35.0 39.0 10 37.898060948524886 39.0 38.0 39.0 35.0 39.0 11 37.98904900552833 39.0 38.0 39.0 35.0 39.0 12 37.92987045411397 39.0 38.0 39.0 35.0 39.0 13 37.978219927279575 39.0 38.0 39.0 35.0 39.0 14 39.401081657402074 40.0 39.0 41.0 37.0 41.0 15 39.373418762218975 40.0 39.0 41.0 36.0 41.0 16 39.344772826311896 40.0 39.0 41.0 36.0 41.0 17 39.32529790802182 40.0 39.0 41.0 36.0 41.0 18 39.31890428784566 40.0 39.0 41.0 36.0 41.0 19 39.3288013843014 40.0 39.0 41.0 36.0 41.0 20 39.29211689702581 40.0 39.0 41.0 36.0 41.0 21 39.28189156458527 40.0 39.0 41.0 36.0 41.0 22 39.25715799321312 40.0 39.0 41.0 36.0 41.0 23 39.204655865931336 40.0 39.0 41.0 36.0 41.0 24 39.18038078291889 40.0 39.0 41.0 36.0 41.0 25 39.13710073218507 40.0 39.0 41.0 36.0 41.0 26 39.05644929525129 40.0 39.0 41.0 36.0 41.0 27 38.98512371995781 40.0 39.0 41.0 36.0 41.0 28 38.933678616748956 40.0 39.0 41.0 35.0 41.0 29 38.884057046788946 40.0 38.0 41.0 35.0 41.0 30 38.83308335297539 40.0 38.0 41.0 35.0 41.0 31 38.79776787026113 40.0 38.0 41.0 35.0 41.0 32 38.747722406972194 40.0 38.0 41.0 35.0 41.0 33 38.71548213072879 40.0 38.0 41.0 35.0 41.0 34 38.67210413020903 40.0 38.0 41.0 35.0 41.0 35 38.62553213305249 40.0 38.0 41.0 35.0 41.0 36 38.5761975351249 40.0 38.0 41.0 35.0 41.0 37 38.55029815289628 40.0 38.0 41.0 35.0 41.0 38 38.50361591012961 40.0 38.0 41.0 35.0 41.0 39 38.47008436394223 40.0 38.0 41.0 34.0 41.0 40 38.424769666910294 40.0 38.0 41.0 34.0 41.0 41 38.35905161265986 40.0 38.0 41.0 34.0 41.0 42 38.27905623088807 40.0 38.0 41.0 34.0 41.0 43 37.3986670909768 39.0 37.0 41.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 0.0 13 1.0 14 1.0 15 7.0 16 9.0 17 21.0 18 57.0 19 112.0 20 280.0 21 589.0 22 1142.0 23 2035.0 24 3737.0 25 5959.0 26 9219.0 27 13583.0 28 19159.0 29 26856.0 30 36892.0 31 50188.0 32 66901.0 33 89655.0 34 124973.0 35 178960.0 36 269940.0 37 465002.0 38 1141842.0 39 2291252.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.85786631604812 17.310269701609524 12.561914163893334 27.269949818449028 2 17.721367037229463 19.25834506125717 36.74044369585799 26.279844205655372 3 19.64870621879023 21.388356938189727 29.30086568854427 29.662071154475772 4 14.75252986582755 14.672898773897924 34.02700538119451 36.54756597908001 5 15.825517669828779 35.00504441397581 33.8781217065687 15.291316209626713 6 36.5486913595993 33.86311663297819 14.835620460834987 14.752571546587523 7 30.771175336994155 29.612825336566928 20.428386514857003 19.187612811581918 8 27.26882443792974 35.2783659975029 18.904954737820727 18.547854826746626 9 27.510822930336655 14.618130255292572 17.965720492574885 39.90532632179589 10 16.896025468611576 26.173912554182383 32.7562423711184 24.17381960608764 11 37.55794928160084 20.796073338964405 20.63139265630858 21.014584723126173 12 22.277907717546995 23.70695341362298 29.77044113040722 24.244697738422804 13 31.624713939734207 19.00761444963578 23.50769854056903 25.85997307006098 14 22.98022852310271 18.992025845405642 24.84521328774292 33.182532343748726 15 26.021298451538925 26.27407142039902 21.5923217371207 26.11230839094135 16 25.574939192981294 25.1441685386538 23.494235655097548 25.78665661326736 17 25.01945970481269 25.129476070763097 24.59698352171995 25.254080702704268 18 25.38854283437921 24.7062913147508 24.759726049037 25.145439801832996 19 26.296058021285113 24.536588100518156 24.64391605745026 24.523437820746473 20 25.761731518803128 24.337020621764403 24.507453249296585 25.393794610135885 21 25.37545507574749 24.66734064455544 24.738510542210417 25.218693737486653 22 25.92964246035691 24.312303931100036 24.154167127760072 25.603886480782982 23 25.46800720326894 24.274624524083873 24.425884002028187 25.831484270619004 24 25.33358675235397 24.27549982004332 24.52495916848551 25.865954259117196 25 25.682767319033083 24.02220584168355 24.38710005487272 25.907926784410645 26 25.401317987311128 24.313866959599046 24.728507159816747 25.55630789327308 27 25.842696395051913 24.464792991463572 24.394727633947895 25.29778297953662 28 25.530507502849403 24.733092043413844 24.212145064883398 25.524255388853355 29 25.517503105737628 24.755870578739437 24.413442295176058 25.31318402034688 30 25.665469803644026 24.590877290383812 24.375012634480367 25.3686402714918 31 25.51650276749826 24.151478718741775 24.51351779987275 25.818500713887214 32 24.95045720667634 24.503139290639314 24.66642366783602 25.879979834848328 33 25.181243574650345 24.171131197069343 24.802553029909905 25.845072198370406 34 25.601156391004707 23.96599933685911 25.077896130295724 25.35494814184046 35 25.328230774697364 24.08270546478528 25.00301664500309 25.586047115514265 36 25.07376973505833 23.834517379522286 25.307848883070257 25.783864002349127 37 24.91825881959671 23.376737592731875 25.522213031614648 26.182790556056766 38 24.80357420852926 23.210598083476974 25.936582306892518 26.049245401101246 39 24.32551673201168 23.057358769433915 26.562231354476733 26.054893144077674 40 24.742657777827795 22.88530059226276 26.834010749884808 25.538030880024642 41 24.190741994636937 22.846516645107293 27.11062511344982 25.852116246805952 42 23.549754427382425 23.154224855612636 27.403828419484338 25.8921922975206 43 23.518598059302136 22.709574508213922 27.29777172573143 26.474055706752512 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 78.0 1 102.5 2 127.0 3 373.5 4 620.0 5 620.0 6 785.0 7 950.0 8 923.5 9 897.0 10 1232.5 11 1568.0 12 1568.0 13 2698.5 14 3829.0 15 5939.5 16 8050.0 17 8262.5 18 8475.0 19 8475.0 20 10484.0 21 12493.0 22 14203.5 23 15914.0 24 21328.5 25 26743.0 26 26743.0 27 33752.0 28 40761.0 29 49334.5 30 57908.0 31 70874.0 32 83840.0 33 83840.0 34 99280.5 35 114721.0 36 133121.5 37 151522.0 38 174843.0 39 198164.0 40 198164.0 41 223444.0 42 248724.0 43 276032.5 44 303341.0 45 335857.5 46 368374.0 47 368374.0 48 398397.5 49 428421.0 50 444968.5 51 461516.0 52 463555.5 53 465595.0 54 465595.0 55 450373.5 56 435152.0 57 403557.0 58 371962.0 59 342861.5 60 313761.0 61 313761.0 62 275599.5 63 237438.0 64 201037.0 65 164636.0 66 135203.5 67 105771.0 68 105771.0 69 85866.0 70 65961.0 71 53516.5 72 41072.0 73 33343.5 74 25615.0 75 25615.0 76 20314.5 77 15014.0 78 12169.5 79 9325.0 80 7256.5 81 5188.0 82 5188.0 83 3959.5 84 2731.0 85 1997.5 86 1264.0 87 933.0 88 602.0 89 602.0 90 386.0 91 170.0 92 114.0 93 58.0 94 35.5 95 13.0 96 13.0 97 11.0 98 9.0 99 6.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4798377.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.773313585565866 #Duplication Level Percentage of deduplicated Percentage of total 1 80.46639227254137 47.292765061332275 2 10.468568488597342 12.305449171446098 3 3.4298494901682623 6.047508589108575 4 1.6403927905294293 3.8564527952515046 5 0.9469684580842044 2.7828237071311364 6 0.6143181947154305 2.166330953959722 7 0.4218563753947499 1.735572792740208 8 0.30533254304384067 1.435632424015515 9 0.24827456560969097 1.3132727009908662 >10 1.3466456580748734 14.178459379324886 >50 0.08074729093187594 3.226479237302448 >100 0.029374991135591662 2.8870682153848626 >500 9.591614982037963E-4 0.35322952832041693 >1k 3.197196749725812E-4 0.41895544369152954 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.0840379986816376E-5 0.0 0.0 0.0 4.168075997363275E-5 7 2.0840379986816376E-5 2.0840379986816376E-5 0.0 2.0840379986816376E-5 4.168075997363275E-5 8 2.0840379986816376E-5 2.0840379986816376E-5 0.0 2.0840379986816376E-5 6.252113996044912E-5 9 2.0840379986816376E-5 2.0840379986816376E-5 0.0 4.168075997363275E-5 8.33615199472655E-5 10 2.0840379986816376E-5 2.0840379986816376E-5 0.0 6.252113996044912E-5 8.33615199472655E-5 11 2.0840379986816376E-5 2.0840379986816376E-5 0.0 6.252113996044912E-5 8.33615199472655E-5 12 2.0840379986816376E-5 2.0840379986816376E-5 0.0 6.252113996044912E-5 1.2504227992089824E-4 13 2.0840379986816376E-5 2.0840379986816376E-5 0.0 6.252113996044912E-5 1.2504227992089824E-4 14 2.0840379986816376E-5 2.0840379986816376E-5 0.0 8.33615199472655E-5 1.4588265990771464E-4 15 2.0840379986816376E-5 2.0840379986816376E-5 0.0 8.33615199472655E-5 2.0840379986816375E-4 16 2.0840379986816376E-5 2.0840379986816376E-5 0.0 1.66723039894531E-4 2.500845598417965E-4 17 2.0840379986816376E-5 2.0840379986816376E-5 0.0 1.66723039894531E-4 2.500845598417965E-4 18 2.0840379986816376E-5 2.0840379986816376E-5 0.0 1.8756341988134738E-4 2.500845598417965E-4 19 2.0840379986816376E-5 2.0840379986816376E-5 0.0 2.0840379986816375E-4 2.500845598417965E-4 20 2.0840379986816376E-5 2.0840379986816376E-5 0.0 3.1260569980224564E-4 2.709249398286129E-4 21 2.0840379986816376E-5 2.0840379986816376E-5 0.0 5.00169119683593E-4 2.709249398286129E-4 22 2.0840379986816376E-5 2.0840379986816376E-5 0.0 6.877325395649404E-4 2.709249398286129E-4 23 2.0840379986816376E-5 2.0840379986816376E-5 0.0 8.961363394331042E-4 4.168075997363275E-4 24 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.0015213477390375954 4.168075997363275E-4 25 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.002000676478734372 4.168075997363275E-4 26 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.00310521661803564 4.376479797231439E-4 27 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.012045739632379865 4.376479797231439E-4 28 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.04880816992912395 4.376479797231439E-4 29 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.10534812083335678 4.376479797231439E-4 30 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.19096040181919846 4.376479797231439E-4 31 2.0840379986816376E-5 2.0840379986816376E-5 0.0 0.5754654125759606 4.584883597099603E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 3315 0.0 20.313726 37 TCTTATA 5855 0.0 16.55679 37 TACTTAC 575 0.0 13.834783 31 TAGACAG 900 0.0 12.744445 5 GTAACGT 205 2.0703737E-8 12.634147 26 TACGGAT 905 0.0 12.469613 27 CTCTTAT 9010 0.0 12.381244 37 ATTACGC 135 9.9727964E-5 12.333334 3 TAACCCG 120 5.126703E-4 12.333333 5 TATACCG 165 3.8100625E-6 12.333333 5 CTCGTTA 510 0.0 11.970588 22 CGTTACG 310 3.6379788E-12 11.935483 24 GGTATCA 5310 0.0 11.636535 1 GTCTTAG 830 0.0 11.36747 1 ATTAGAC 345 1.8189894E-12 11.26087 3 GTATTAA 840 0.0 11.232142 1 TCGTTAC 430 0.0 11.186047 23 ACCGTTA 450 0.0 11.1 8 CGATCGT 350 3.6379788E-12 11.1 25 CTTAGAC 735 0.0 11.07483 3 >>END_MODULE