FastQCFastQC Report
Thu 9 Feb 2017
SRR3211938.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211938.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3978749
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC31000.020.88709637
TACTTAC12600.018.94047531
TATACCG2450.017.3673465
TCTTATA58750.017.28765937
AGTGTAC16200.016.10185227
CTCGTTA12400.015.9637122
GTACTTA15900.015.59119430
TATACTG3800.015.5789485
TAATACG3500.015.32857127
TCTATAC4100.014.4390253
GTGTACT17200.014.4127928
GGTATCA34050.014.3436131
TACGGAT20300.014.21674727
TCGTTAC11550.014.09523823
CGTTACG9400.013.77659524
CAGTGTA19400.013.44587626
ACGGATG21800.013.32339628
GTAACGT2501.0913936E-1113.3226
GATCTCG16450.013.27051719
CTACAGT20700.013.22705423
Produced by FastQC (version 0.11.5)