FastQCFastQC Report
Thu 9 Feb 2017
SRR3211937.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211937.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1436784
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC8300.021.62048137
TACTTAC3300.020.18181631
TAGACCG852.7238828E-517.4117645
TAATATA752.0677195E-417.2666664
TCTTATA16400.017.03353537
GTACTTA4200.016.73809430
GTATACT1005.879847E-616.6500024
ACTTACA3000.016.03333332
GTCATAT1353.9738552E-715.0740751
GTCTTAG1853.0559022E-1015.01
GTAATAG1001.09366585E-414.83
GGTAATA1304.4455337E-614.2307692
GTATAAA1203.3014876E-513.8750011
TATACTG2009.840733E-1013.8750015
ATATTAT800.006299631713.8750011
ATAACTC950.001245338613.6315793
ATACTTA1000.001832868212.9500016
GTAACGT1000.001832868212.95000126
AGTGTAC5300.012.91509427
GTATTAG2052.0658263E-812.6341461
Produced by FastQC (version 0.11.5)