FastQCFastQC Report
Thu 9 Feb 2017
SRR3211936.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211936.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2755703
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC20700.023.23671537
TATACCG1103.857349E-818.55
TCTTATA36900.016.3943137
TACTTAC6450.016.06201731
TCTATAC2500.015.5400013
GGTATCA19200.014.9348961
GGACCGT3050.014.5573776
ATCTATA1803.3360266E-914.3888882
GTATAGA2750.014.1272721
GTACTTA8000.013.87500130
CTCTTAT60200.013.79817237
CGCGAAT950.00124584713.631577528
GTATACG1501.3072804E-613.5666671
TAATCGA1703.7365862E-713.05882320
ATTACGG5550.012.66666725
TACGGAT10150.012.57635527
GTTTAAG3250.012.5230781
AGGGCGT7250.012.503448510
GTCTTAG4150.012.4819281
AGTGTAC9050.012.46961327
Produced by FastQC (version 0.11.5)