FastQCFastQC Report
Thu 9 Feb 2017
SRR3211932.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211932.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7313177
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC53050.020.81903837
TACTTAC18950.017.47493431
TATACCG3150.017.0317465
TCTTATA91350.015.67487737
GGTATCA55250.015.2687791
CTCGTTA16250.015.25538422
TCGTTAC16100.014.24844723
GTACTTA24200.013.76033130
TTATACT8950.013.6424594
AGTGTAC29000.012.9527
CGTTACA8000.012.71875124
GTATTAG6700.012.7014921
TACGGAT25350.012.69822427
CGTTACG11500.012.54782724
TCTCGTT20000.012.487521
GTACTAG5500.012.4454551
TTACGGG7900.012.41139226
ACGGATG26500.012.35660428
ATGGTTG65300.012.35222132
GATCTCG23550.012.33333319
Produced by FastQC (version 0.11.5)