##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3211932.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7313177 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59518031629755 34.0 31.0 34.0 31.0 34.0 2 32.72089941211596 34.0 31.0 34.0 31.0 34.0 3 32.80024153661261 34.0 31.0 34.0 31.0 34.0 4 36.25094716017403 37.0 37.0 37.0 35.0 37.0 5 36.16108389007951 37.0 35.0 37.0 35.0 37.0 6 36.17728765487284 37.0 36.0 37.0 35.0 37.0 7 36.16273064360401 37.0 36.0 37.0 35.0 37.0 8 36.14571409935791 37.0 36.0 37.0 35.0 37.0 9 37.994553940100175 39.0 38.0 39.0 35.0 39.0 10 37.880969378971685 39.0 38.0 39.0 35.0 39.0 11 37.97357550624031 39.0 38.0 39.0 35.0 39.0 12 37.91751437166091 39.0 38.0 39.0 35.0 39.0 13 37.96519720499039 39.0 38.0 39.0 35.0 39.0 14 39.3818914816365 40.0 39.0 41.0 36.0 41.0 15 39.35261063693659 40.0 39.0 41.0 36.0 41.0 16 39.318493590405375 40.0 39.0 41.0 36.0 41.0 17 39.30665947234697 40.0 39.0 41.0 36.0 41.0 18 39.295167886679074 40.0 39.0 41.0 36.0 41.0 19 39.305535337104516 40.0 39.0 41.0 36.0 41.0 20 39.26527909826331 40.0 39.0 41.0 36.0 41.0 21 39.25825670566978 40.0 39.0 41.0 36.0 41.0 22 39.235393728334486 40.0 39.0 41.0 36.0 41.0 23 39.18142593841227 40.0 39.0 41.0 36.0 41.0 24 39.15899150259867 40.0 39.0 41.0 36.0 41.0 25 39.11150516389799 40.0 39.0 41.0 36.0 41.0 26 39.03000159848449 40.0 39.0 41.0 36.0 41.0 27 38.95755565604388 40.0 39.0 41.0 35.0 41.0 28 38.900360677719135 40.0 38.0 41.0 35.0 41.0 29 38.8482927460938 40.0 38.0 41.0 35.0 41.0 30 38.80566982038039 40.0 38.0 41.0 35.0 41.0 31 38.7607317585777 40.0 38.0 41.0 35.0 41.0 32 38.70677586499001 40.0 38.0 41.0 35.0 41.0 33 38.676633151364996 40.0 38.0 41.0 35.0 41.0 34 38.63278722776708 40.0 38.0 41.0 35.0 41.0 35 38.59163862709736 40.0 38.0 41.0 35.0 41.0 36 38.53014811483436 40.0 38.0 41.0 35.0 41.0 37 38.51201618667236 40.0 38.0 41.0 35.0 41.0 38 38.46804829146074 40.0 38.0 41.0 34.0 41.0 39 38.426200405104375 40.0 38.0 41.0 34.0 41.0 40 38.3853388205974 40.0 38.0 41.0 34.0 41.0 41 38.31037755547281 40.0 38.0 41.0 34.0 41.0 42 38.23650952246883 40.0 38.0 41.0 34.0 41.0 43 37.34139950393652 39.0 37.0 41.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 0.0 12 1.0 13 1.0 14 2.0 15 10.0 16 19.0 17 39.0 18 82.0 19 182.0 20 418.0 21 854.0 22 1732.0 23 3306.0 24 5769.0 25 9063.0 26 13779.0 27 20518.0 28 29645.0 29 41541.0 30 58183.0 31 78136.0 32 104570.0 33 140861.0 34 195949.0 35 280198.0 36 421909.0 37 720539.0 38 1739246.0 39 3446622.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.961383267490994 17.00851763877724 12.520604929977766 27.509494163754 2 17.76743541144977 19.1843435486383 36.83910563083595 26.209115409075974 3 19.59811720678988 21.18488312261552 29.653199970409577 29.563799700185022 4 14.936559035833538 14.663668061090277 33.90738389074953 36.492389012326655 5 15.79056544098413 35.21950856652314 33.7542356762321 15.235690316260635 6 36.43397390764643 33.679589595602565 14.988451667449043 14.897984829301958 7 30.57627348551799 30.093966001369854 20.249708163770684 19.08005234934147 8 27.262173471256062 35.5087399087975 18.91790667722113 18.311179942725303 9 28.011396414991736 14.516208208826342 17.776241433784524 39.6961539423974 10 16.843760242641466 26.23103474727878 32.57385948678666 24.35134552329309 11 37.7411075925005 20.84757418014086 20.532881947202974 20.878436280155668 12 22.218729288242304 23.397751756862988 29.75652031941795 24.626998635476756 13 31.591044494068722 19.010055410938364 23.56603703151175 25.832863063481167 14 22.95915988359095 19.01619501346679 24.678631462085495 33.34601364085677 15 26.157756061421733 26.20799414536254 21.584449549081064 26.049800244134662 16 25.290349187500865 25.351252950666996 23.615782853334466 25.742615008497676 17 25.07661171061496 24.97690128380593 24.307438477148853 25.63904852843026 18 25.239276992748845 25.045571849279728 24.760620452643224 24.954530705328203 19 26.54125559931067 24.588820973429197 24.525196094665837 24.344727332594303 20 25.787451883087197 24.1058161179471 24.463034328309025 25.643697670656678 21 25.295189764995435 24.67087833372555 25.042399493407586 24.991532407871436 22 26.054804909001927 23.910962362869107 24.07957581226326 25.954656915865705 23 25.334461342860976 24.271708451744022 24.802818255321863 25.591011950073135 24 25.110946993351863 23.918182207267787 24.84518014537321 26.125690654007144 25 25.678949107891142 23.869530301263048 24.532593700384936 25.918926890460874 26 25.305185420782237 24.150147056470807 24.8978932138522 25.646774308894756 27 25.87109542131963 24.539088825554202 24.413507289649903 25.17630846347627 28 25.384740448644962 25.084651991877127 23.851617429743598 25.678990129734313 29 25.427307447912174 24.954790510334977 24.47248302618684 25.145419015566013 30 26.15517168530175 24.443576300696673 24.111559175991502 25.289692838010076 31 25.63135009586121 24.150215426209428 24.589272213704113 25.629162264225247 32 24.98788146382892 24.571509755609636 24.56794085525347 25.872667925307972 33 25.076051078758248 23.95838361357861 24.81381210929258 26.15175319837056 34 25.47487911204665 24.056822363249243 25.338727614551104 25.129570910153003 35 25.361604129094644 23.920971692603636 24.953327397928422 25.76409678037329 36 25.07246850445436 23.58721797653742 25.598806100276256 25.741507418731967 37 24.737155958347515 23.373808674396916 25.847972775717036 26.041062591538534 38 25.026264235092356 22.989051133317297 25.85390726902959 26.13077736256076 39 24.1863009742551 23.085985748738203 26.891459074489788 25.836254202516905 40 25.031214204168723 22.657840771527887 26.809196604977565 25.501748419325825 41 24.034369741085168 22.963508198967425 27.17494735871975 25.827174701227662 42 23.678997513666086 23.125831632408186 27.387782355055812 25.807388498869916 43 23.26723392583005 22.773098476899985 27.14409893265266 26.815568664617306 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 175.0 1 221.0 2 267.0 3 681.5 4 1096.0 5 1096.0 6 1434.5 7 1773.0 8 1657.0 9 1541.0 10 2158.5 11 2776.0 12 2776.0 13 4555.5 14 6335.0 15 10099.0 16 13863.0 17 14003.0 18 14143.0 19 14143.0 20 17126.0 21 20109.0 22 22296.5 23 24484.0 24 31907.0 25 39330.0 26 39330.0 27 49524.0 28 59718.0 29 72306.0 30 84894.0 31 102679.0 32 120464.0 33 120464.0 34 143346.5 35 166229.0 36 193914.0 37 221599.0 38 256295.5 39 290992.0 40 290992.0 41 331560.5 42 372129.0 43 417307.5 44 462486.0 45 519042.0 46 575598.0 47 575598.0 48 626943.0 49 678288.0 50 702971.5 51 727655.0 52 723850.0 53 720045.0 54 720045.0 55 686382.0 56 652719.0 57 610266.0 58 567813.0 59 522729.5 60 477646.0 61 477646.0 62 418058.0 63 358470.0 64 300623.0 65 242776.0 66 200538.5 67 158301.0 68 158301.0 69 129068.0 70 99835.0 71 80592.5 72 61350.0 73 49891.5 74 38433.0 75 38433.0 76 30481.5 77 22530.0 78 18081.5 79 13633.0 80 10468.5 81 7304.0 82 7304.0 83 5489.5 84 3675.0 85 2699.0 86 1723.0 87 1210.0 88 697.0 89 697.0 90 449.5 91 202.0 92 125.0 93 48.0 94 34.5 95 21.0 96 21.0 97 15.5 98 10.0 99 6.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 7313177.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.700861660495455 #Duplication Level Percentage of deduplicated Percentage of total 1 77.5280839005746 40.082687405468924 2 11.516467638347057 11.90822600375508 3 3.9410487493843043 6.112668485675597 4 1.8955343511944622 3.920030370552875 5 1.1265127108355997 2.912083891085053 6 0.7615195827312113 2.3622731159126746 7 0.5341888941347389 1.933261828136323 8 0.39381465454732273 1.6288445579701554 9 0.30207991196027406 1.4056012564805498 >10 1.8226284345972663 17.509964433610744 >50 0.12648050168141323 4.426431702469731 >100 0.04891191161153022 4.453826135742419 >500 0.00211948243270962 0.7426818814630446 >1k 5.827857088127755E-4 0.5178752107414313 >5k 2.649025860838205E-5 0.08354372093542525 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3673947724771327E-5 2 0.0 0.0 0.0 0.0 1.3673947724771327E-5 3 0.0 0.0 0.0 0.0 2.7347895449542654E-5 4 0.0 0.0 0.0 1.3673947724771327E-5 2.7347895449542654E-5 5 0.0 0.0 0.0 1.3673947724771327E-5 2.7347895449542654E-5 6 1.3673947724771327E-5 0.0 0.0 1.3673947724771327E-5 2.7347895449542654E-5 7 1.3673947724771327E-5 0.0 0.0 4.102184317431398E-5 4.102184317431398E-5 8 1.3673947724771327E-5 0.0 0.0 4.102184317431398E-5 4.102184317431398E-5 9 1.3673947724771327E-5 0.0 0.0 1.0939158179817062E-4 4.102184317431398E-5 10 1.3673947724771327E-5 0.0 0.0 1.2306552952294193E-4 5.469579089908531E-5 11 1.3673947724771327E-5 0.0 0.0 1.2306552952294193E-4 5.469579089908531E-5 12 1.3673947724771327E-5 0.0 0.0 1.3673947724771328E-4 1.0939158179817062E-4 13 1.3673947724771327E-5 1.3673947724771327E-5 0.0 1.3673947724771328E-4 1.0939158179817062E-4 14 1.3673947724771327E-5 1.3673947724771327E-5 0.0 1.504134249724846E-4 1.2306552952294193E-4 15 1.3673947724771327E-5 1.3673947724771327E-5 0.0 1.504134249724846E-4 1.9143526814679857E-4 16 1.3673947724771327E-5 1.3673947724771327E-5 0.0 1.9143526814679857E-4 2.4613105904588387E-4 17 1.3673947724771327E-5 1.3673947724771327E-5 0.0 2.4613105904588387E-4 2.4613105904588387E-4 18 1.3673947724771327E-5 1.3673947724771327E-5 0.0 2.598050067706552E-4 3.008268499449692E-4 19 1.3673947724771327E-5 1.3673947724771327E-5 0.0 3.555226408440545E-4 3.008268499449692E-4 20 1.3673947724771327E-5 1.3673947724771327E-5 0.0 4.238923794679111E-4 3.4184869311928317E-4 21 1.3673947724771327E-5 1.3673947724771327E-5 0.0 6.70023438513795E-4 3.555226408440545E-4 22 1.3673947724771327E-5 1.3673947724771327E-5 0.0 8.204368634862797E-4 3.8287053629359715E-4 23 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.0010665679225321635 4.238923794679111E-4 24 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.0016135258315230167 4.3756632719268247E-4 25 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.0021604837405138698 4.512402749174538E-4 26 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.0035005306175414598 4.512402749174538E-4 27 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.014617450117780548 4.512402749174538E-4 28 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.0545590514218376 4.512402749174538E-4 29 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.11844373519196924 4.512402749174538E-4 30 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.20633987116679933 4.512402749174538E-4 31 1.3673947724771327E-5 2.7347895449542654E-5 0.0 0.6143157754830767 4.512402749174538E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 5305 0.0 20.819038 37 TACTTAC 1895 0.0 17.474934 31 TATACCG 315 0.0 17.031746 5 TCTTATA 9135 0.0 15.674877 37 GGTATCA 5525 0.0 15.268779 1 CTCGTTA 1625 0.0 15.255384 22 TCGTTAC 1610 0.0 14.248447 23 GTACTTA 2420 0.0 13.760331 30 TTATACT 895 0.0 13.642459 4 AGTGTAC 2900 0.0 12.95 27 CGTTACA 800 0.0 12.718751 24 GTATTAG 670 0.0 12.701492 1 TACGGAT 2535 0.0 12.698224 27 CGTTACG 1150 0.0 12.547827 24 TCTCGTT 2000 0.0 12.4875 21 GTACTAG 550 0.0 12.445455 1 TTACGGG 790 0.0 12.411392 26 ACGGATG 2650 0.0 12.356604 28 ATGGTTG 6530 0.0 12.352221 32 GATCTCG 2355 0.0 12.333333 19 >>END_MODULE