FastQCFastQC Report
Thu 9 Feb 2017
SRR3211928.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211928.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2057194
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC16750.021.31641837
TAAGACG450.003826820320.5555554
TTATACG500.00703672418.54
TAGTCCG650.001580508117.07692120
TCTTATA30000.016.40333237
GTCTTAC1606.311893E-1016.18751
TATACCG1151.2432847E-616.0869565
TAGAGTA1302.591678E-715.6538455
GGACCGT2201.8189894E-1215.1363646
TATAAGT1252.961311E-614.8000014
TTAGGCA2251.8189894E-1214.84
GTTATAC1152.211411E-514.4782613
TAGGACT2201.8189894E-1114.2954544
TCCTACG2101.364242E-1014.0952389
ATTAGGT800.006300850313.8750013
TCTATAC1601.7853017E-713.8750013
ATCTATA1753.5699486E-813.7428572
TAGATAG1356.572536E-613.7037035
GTATTAG2750.013.4545461
CTCTTAT45800.013.37008737
Produced by FastQC (version 0.11.5)