FastQCFastQC Report
Thu 9 Feb 2017
SRR3211927.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211927.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1994112
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC15600.023.12537
TAATACG1005.8821497E-616.6527
TATTAAG1452.9831426E-916.5862082
TCTTATA27650.016.45931237
TACTTAC2750.016.14545431
ACTATCG1951.8189894E-1216.12820611
GTAACGT1504.6766218E-916.03333326
TCTATAC1701.4879333E-915.2352943
TTATACT2600.014.9423074
TATACTG3000.014.85
GTATAGA1803.3342076E-914.3888881
TTAGCCG1854.9039954E-914.04
CGGGTAA1753.5695848E-813.74285823
GTCTTAG3100.013.7258061
TAGTACT1356.5722925E-613.7037044
TTATACG950.00124563513.6315794
ATACCGT1102.457779E-413.4545456
TTAGATG2900.013.3965533
CGTATTA1254.847873E-513.322
GTATTAG1551.8893006E-613.1290321
Produced by FastQC (version 0.11.5)