FastQCFastQC Report
Thu 9 Feb 2017
SRR3211922.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211922.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3127129
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA13700.025.9270081
CTTATAC37000.020.737
TACTTAC10000.020.16499931
GTACTTA11300.018.82743530
ACATATA3550.016.67605836
ACTTACA9350.016.6203232
GTATCAA21950.016.2665162
CTCGTTA15150.015.996722
AGTGTAC13800.015.55072527
TCTTATA62700.015.54944237
TTACATA5200.015.29807734
GTCTAAT1353.9782026E-715.0740751
TCGTTAC15050.014.99667623
CAGTGTA15250.014.826
TATACTG3050.014.5573775
ATTATAC1803.3378456E-914.3888893
GTATTAT2450.014.346941
CTTACAT6850.014.313868533
TACGGAT19950.014.28070227
TACATAT5500.014.12727235
Produced by FastQC (version 0.11.5)