##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3211922.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3127129 Sequences flagged as poor quality 0 Sequence length 43 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43204933343012 34.0 31.0 34.0 31.0 34.0 2 32.569056153423794 34.0 31.0 34.0 31.0 34.0 3 32.645295732923074 34.0 31.0 34.0 31.0 34.0 4 36.14402699728729 37.0 35.0 37.0 35.0 37.0 5 36.02951653097777 37.0 35.0 37.0 35.0 37.0 6 36.0427686225928 37.0 35.0 37.0 35.0 37.0 7 36.02771232015053 37.0 35.0 37.0 35.0 37.0 8 36.00490417888101 37.0 35.0 37.0 35.0 37.0 9 37.850463796025046 39.0 38.0 39.0 35.0 39.0 10 37.71570888185297 39.0 37.0 39.0 35.0 39.0 11 37.81596441976011 39.0 38.0 39.0 35.0 39.0 12 37.75088267864869 39.0 37.0 39.0 35.0 39.0 13 37.80484111784324 39.0 38.0 39.0 35.0 39.0 14 39.16613865305845 40.0 39.0 41.0 36.0 41.0 15 39.12692920567076 40.0 39.0 41.0 36.0 41.0 16 39.07959889086763 40.0 38.0 41.0 36.0 41.0 17 39.06570243824287 40.0 38.0 41.0 36.0 41.0 18 39.04190744929294 40.0 38.0 41.0 36.0 41.0 19 39.05459288695798 40.0 39.0 41.0 36.0 41.0 20 39.00104312933684 40.0 39.0 41.0 36.0 41.0 21 38.9878831349778 40.0 38.0 41.0 36.0 41.0 22 38.96075633592346 40.0 38.0 41.0 35.0 41.0 23 38.89501264578468 40.0 38.0 41.0 35.0 41.0 24 38.86253301350855 40.0 38.0 41.0 35.0 41.0 25 38.804974786777265 40.0 38.0 41.0 35.0 41.0 26 38.698671209278544 40.0 38.0 41.0 35.0 41.0 27 38.61627134665695 40.0 38.0 41.0 35.0 41.0 28 38.54705642140123 40.0 38.0 41.0 34.0 41.0 29 38.478015777411166 40.0 38.0 41.0 34.0 41.0 30 38.427292893897246 40.0 38.0 41.0 34.0 41.0 31 38.36243052333306 40.0 38.0 41.0 34.0 41.0 32 38.297355177864425 40.0 38.0 41.0 34.0 41.0 33 38.25510748037577 40.0 38.0 41.0 34.0 41.0 34 38.18931102618408 40.0 38.0 41.0 34.0 41.0 35 38.1372063640483 40.0 38.0 41.0 33.0 41.0 36 38.049919590781194 40.0 38.0 41.0 33.0 41.0 37 38.02608398949963 40.0 38.0 41.0 33.0 41.0 38 37.96909177715406 40.0 37.0 41.0 33.0 41.0 39 37.91375187911979 40.0 37.0 41.0 33.0 41.0 40 37.86419779932328 40.0 37.0 41.0 33.0 41.0 41 37.77417848767991 40.0 37.0 41.0 33.0 41.0 42 37.69211375673981 40.0 37.0 41.0 33.0 41.0 43 36.72275528128197 39.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 0.0 12 0.0 13 1.0 14 3.0 15 2.0 16 7.0 17 25.0 18 52.0 19 151.0 20 273.0 21 630.0 22 1217.0 23 2129.0 24 3579.0 25 5411.0 26 8088.0 27 11675.0 28 16089.0 29 22238.0 30 30114.0 31 40517.0 32 53724.0 33 71834.0 34 100400.0 35 144220.0 36 220248.0 37 368245.0 38 825945.0 39 1200309.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.529128475352316 16.09533856774057 12.078523143752625 28.297009813154496 2 19.322420021687627 18.607706941414953 34.911223681530245 27.158649355367174 3 20.478208606040877 19.95798702260124 28.79593390614842 30.767870465209462 4 16.291237105984436 14.140478374892753 31.698436489188648 37.86984802993417 5 17.20024981380685 33.887920837291965 32.38951766940219 16.52231167949899 6 38.115440712551354 31.67458074163234 14.267847600786537 15.94213094502977 7 31.875659750525166 29.03190114638699 18.95329549884255 20.139143604245298 8 28.402282093255504 34.11506209049898 18.116329706897286 19.366326109348222 9 29.080540009702187 13.567876477113671 16.627775828883298 40.72380768430084 10 17.896543442883235 24.97095578724127 30.950466066478228 26.18203470339727 11 39.41900062325539 19.94014317925484 19.28458979466469 21.35626640282508 12 23.289861083441075 22.209796909561454 27.93236224025296 26.567979766744514 13 32.989205114339704 17.98211714323266 21.974501211814417 27.054176530613223 14 23.884304101301865 18.110701541253974 23.155072911926563 34.849921445517595 15 28.008374454651534 24.72363628107443 20.13102113791916 27.136968126354876 16 26.608592098375215 24.148476126184754 22.27432894517623 26.968602830263798 17 26.537312659631247 23.38851387326842 22.712622344649038 27.361551122451296 18 26.6399627261939 23.97927939653273 23.075734963284216 26.305022913989156 19 28.496330020283782 23.139051826771457 22.79295161792174 25.57166653502302 20 27.265488567948427 22.629478988554677 22.858123217814168 27.246909225682725 21 26.76525336818532 23.509871194952304 23.621986812824158 26.10288862403822 22 28.01377877279767 22.234068373898232 22.191601305862342 27.560551547441758 23 26.78009125942678 23.02968633529349 23.36254756359587 26.82767484168386 24 26.389701224349878 22.315548862870706 23.46877919011336 27.82597072266606 25 27.20079664126424 22.191569327648462 22.94510395957442 27.66253007151288 26 26.611182333699695 22.595837907550344 23.690676016243653 27.102303742506308 27 27.533114239930622 23.045291703668124 22.790233469741732 26.631360586659518 28 26.770849555614753 23.92347741330786 21.97968168246337 27.325991348614014 29 26.690136543775456 23.79335806102019 23.1615644893447 26.354940905859657 30 28.070508124225128 22.853358463945682 22.319546139606008 26.756587272223182 31 27.052513663491336 22.818054515819462 23.209467853740602 26.919963966948597 32 26.324433689815802 23.191336206469256 23.24410025937529 27.24012984433965 33 26.371281773153587 22.280244914744483 23.414192379016026 27.93428093308591 34 26.898410650791828 22.444005348036487 24.463333620071317 26.194250381100364 35 26.669862356173983 21.993048575866233 23.949795483333112 27.387293584626665 36 26.00465155099134 21.655390615481483 24.96695851050596 27.37299932302121 37 25.435023627103327 21.36563601949264 25.51624829036474 27.683092063039293 38 25.95639642624273 20.85606318127586 25.42808435469084 27.759456037790574 39 24.799520582617475 21.125703480732646 26.912832825252814 27.16194311139707 40 25.925633384487817 20.412781180437392 26.826491647770208 26.835093787304586 41 24.490003450449276 21.18169733324081 27.280582284900945 27.04771693140897 42 23.959452903925612 21.23139147761413 27.6389941060954 27.170161512364853 43 23.21506404117003 20.856990549478454 27.301272189282887 28.626673220068632 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 22.0 1 41.0 2 60.0 3 104.5 4 149.0 5 149.0 6 178.0 7 207.0 8 212.0 9 217.0 10 295.5 11 374.0 12 374.0 13 604.0 14 834.0 15 1378.5 16 1923.0 17 2055.0 18 2187.0 19 2187.0 20 2820.5 21 3454.0 22 4134.0 23 4814.0 24 6596.0 25 8378.0 26 8378.0 27 11201.0 28 14024.0 29 17695.5 30 21367.0 31 27259.5 32 33152.0 33 33152.0 34 41170.0 35 49188.0 36 59949.5 37 70711.0 38 84177.0 39 97643.0 40 97643.0 41 113021.0 42 128399.0 43 147671.0 44 166943.0 45 193160.0 46 219377.0 47 219377.0 48 243724.0 49 268071.0 50 286893.5 51 305716.0 52 308677.0 53 311638.0 54 311638.0 55 297077.5 56 282517.0 57 268060.0 58 253603.0 59 239634.5 60 225666.0 61 225666.0 62 203087.5 63 180509.0 64 158780.5 65 137052.0 66 120814.0 67 104576.0 68 104576.0 69 91535.5 70 78495.0 71 67803.5 72 57112.0 73 48721.5 74 40331.0 75 40331.0 76 33593.5 77 26856.0 78 21368.0 79 15880.0 80 12311.0 81 8742.0 82 8742.0 83 6332.5 84 3923.0 85 2928.0 86 1933.0 87 1341.0 88 749.0 89 749.0 90 492.0 91 235.0 92 151.5 93 68.0 94 43.0 95 18.0 96 18.0 97 14.0 98 10.0 99 8.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3127129.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.35116852509763 #Duplication Level Percentage of deduplicated Percentage of total 1 83.0423478679314 53.43872122369036 2 9.297163667478497 11.965666919426472 3 2.9027036769158387 5.60377120474895 4 1.4563054496073238 3.748598296467959 5 0.8322008991081702 2.6776550152623817 6 0.5371719222447514 2.0740584537193585 7 0.37080881266297533 1.670338627598654 8 0.26127742043750596 1.3450805851501386 9 0.2042209948491558 1.182767369031101 >10 1.0362272721088368 11.498142889304816 >50 0.03967763962760884 1.7399309361412958 >100 0.018004641794316316 2.065934211993049 >500 0.0015913559866306143 0.6950781270369176 >1k 2.983792470149578E-4 0.2942561404287109 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.197821388244617E-5 2 0.0 0.0 0.0 3.197821388244617E-5 3.197821388244617E-5 3 0.0 0.0 0.0 3.197821388244617E-5 3.197821388244617E-5 4 0.0 0.0 0.0 3.197821388244617E-5 3.197821388244617E-5 5 0.0 0.0 0.0 3.197821388244617E-5 3.197821388244617E-5 6 0.0 0.0 0.0 3.197821388244617E-5 6.395642776489234E-5 7 0.0 0.0 3.197821388244617E-5 3.197821388244617E-5 6.395642776489234E-5 8 3.197821388244617E-5 0.0 3.197821388244617E-5 6.395642776489234E-5 1.2791285552978467E-4 9 3.197821388244617E-5 0.0 3.197821388244617E-5 9.59346416473385E-5 1.91869283294677E-4 10 6.395642776489234E-5 0.0 3.197821388244617E-5 1.2791285552978467E-4 1.91869283294677E-4 11 6.395642776489234E-5 0.0 3.197821388244617E-5 1.91869283294677E-4 2.2384749717712317E-4 12 6.395642776489234E-5 0.0 3.197821388244617E-5 2.2384749717712317E-4 2.2384749717712317E-4 13 6.395642776489234E-5 0.0 3.197821388244617E-5 2.878039249420155E-4 2.2384749717712317E-4 14 6.395642776489234E-5 0.0 3.197821388244617E-5 3.1978213882446165E-4 2.878039249420155E-4 15 6.395642776489234E-5 3.197821388244617E-5 3.197821388244617E-5 3.5176035270690785E-4 4.1571678047180015E-4 16 9.59346416473385E-5 3.197821388244617E-5 3.197821388244617E-5 3.83738566589354E-4 4.796732082366925E-4 17 9.59346416473385E-5 3.197821388244617E-5 3.197821388244617E-5 3.83738566589354E-4 4.796732082366925E-4 18 9.59346416473385E-5 3.197821388244617E-5 3.197821388244617E-5 3.83738566589354E-4 5.75607849884031E-4 19 9.59346416473385E-5 3.197821388244617E-5 3.197821388244617E-5 3.83738566589354E-4 5.75607849884031E-4 20 1.2791285552978467E-4 3.197821388244617E-5 6.395642776489234E-5 5.75607849884031E-4 6.395642776489233E-4 21 1.2791285552978467E-4 3.197821388244617E-5 9.59346416473385E-5 7.994553470611541E-4 6.715424915313695E-4 22 1.2791285552978467E-4 3.197821388244617E-5 9.59346416473385E-5 0.0012471503414154005 6.715424915313695E-4 23 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.0015989106941223083 8.953899887084927E-4 24 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.002686169966125478 8.953899887084927E-4 25 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.003453647099304186 8.953899887084927E-4 26 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.005947947782134987 9.273682025909388E-4 27 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.02810885000267018 9.273682025909388E-4 28 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.11237144358291583 9.273682025909388E-4 29 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.2345282206138602 9.273682025909388E-4 30 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 0.38760793046913 9.273682025909388E-4 31 1.91869283294677E-4 3.197821388244617E-5 9.59346416473385E-5 1.000054682745739 9.273682025909388E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1370 0.0 25.927008 1 CTTATAC 3700 0.0 20.7 37 TACTTAC 1000 0.0 20.164999 31 GTACTTA 1130 0.0 18.827435 30 ACATATA 355 0.0 16.676058 36 ACTTACA 935 0.0 16.62032 32 GTATCAA 2195 0.0 16.266516 2 CTCGTTA 1515 0.0 15.9967 22 AGTGTAC 1380 0.0 15.550725 27 TCTTATA 6270 0.0 15.549442 37 TTACATA 520 0.0 15.298077 34 GTCTAAT 135 3.9782026E-7 15.074075 1 TCGTTAC 1505 0.0 14.996676 23 CAGTGTA 1525 0.0 14.8 26 TATACTG 305 0.0 14.557377 5 ATTATAC 180 3.3378456E-9 14.388889 3 GTATTAT 245 0.0 14.34694 1 CTTACAT 685 0.0 14.3138685 33 TACGGAT 1995 0.0 14.280702 27 TACATAT 550 0.0 14.127272 35 >>END_MODULE