FastQCFastQC Report
Thu 9 Feb 2017
SRR3211920.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211920.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4071563
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC32950.021.84066637
TACTTAC11500.016.89130431
TCTTATA58000.016.61810337
GGTATCA30750.015.4016261
GTATTAG4250.014.81
TCTATAC3800.014.1184223
GTACTTA15150.013.67656630
TTACGCA950.001246025713.63157929
TATCGCG2051.4279067E-913.5365857
ACTTACA10200.013.42156932
TTCGTTA3100.013.12903222
TCGTTAC10900.013.06880823
TAGATCG850.00941010213.0588245
GTAACGT2703.6379788E-1213.01851826
GTCTAGA5700.012.9824571
TTTATAC4150.012.9277113
CGTTACA4950.012.70707124
CTCGTTA10350.012.51207722
GTATAAT3700.012.51
TACGGAT15300.012.45424827
Produced by FastQC (version 0.11.5)