FastQCFastQC Report
Thu 9 Feb 2017
SRR3211908.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211908.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5032089
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC34800.019.77586437
TCTTATA59450.015.96383537
TACTTAC10850.014.15207431
TATACCG2650.013.9622645
TCTATAC5400.013.0185183
TAGCGTA1153.580909E-412.86956514
CTCTTAT92950.012.4792937
CGCCGTT2451.5661499E-912.08163325
GGACCGT5850.012.0170946
TATACTG6550.011.8625955
CGCGGTA3600.011.81944522
GTATATG5800.011.8017241
GGTATCA51800.011.6071421
GTAACGT3205.456968E-1211.56250126
ACTATCG4650.011.53763411
TAATCGA2952.1100277E-1011.28813620
GTACCGT4950.011.2121216
ACCGTCC5950.011.1932778
AGTGTAC15550.011.06430827
GTATAGG6700.011.0447761
Produced by FastQC (version 0.11.5)