FastQCFastQC Report
Thu 9 Feb 2017
SRR3211906.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3211906.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6131327
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC48700.019.37371637
GGTATCA38100.017.431761
TCTATAC6650.016.691733
TATACCG2150.016.3488375
TCTTATA84700.016.11924637
ATACCGT3450.013.9420286
TTAGCGC2202.8558134E-1013.4545454
CTCTTAT131750.013.39582637
TACTTAC8300.013.15060131
GTATCAA54250.012.2764982
ACTATCG5800.012.1206911
CGTTACG6150.012.0325224
TATACTG8950.011.9888275
CTATACT6700.011.5970154
TCGTTAC7100.011.46478823
TAGTACT5850.011.3846154
CTCGTTA8750.011.20571322
GTATTAG7850.011.0764331
ATCTATA4750.010.9052632
GTGTAAG11050.010.8823531
Produced by FastQC (version 0.11.5)