##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727608.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2005008 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.149106138229875 34.0 33.0 34.0 31.0 34.0 2 33.32764707173238 34.0 33.0 34.0 31.0 34.0 3 33.415516546567396 34.0 34.0 34.0 31.0 34.0 4 36.6097222554723 37.0 37.0 37.0 35.0 37.0 5 36.59485248936662 37.0 37.0 37.0 35.0 37.0 6 36.623571576771766 37.0 37.0 37.0 35.0 37.0 7 36.630213445532384 37.0 37.0 37.0 35.0 37.0 8 36.6088983186102 37.0 37.0 37.0 35.0 37.0 9 38.27498394021371 39.0 39.0 39.0 37.0 39.0 10 38.37968726309322 39.0 39.0 39.0 37.0 39.0 11 38.479886364543184 39.0 39.0 39.0 37.0 39.0 12 38.46076075506931 39.0 39.0 39.0 37.0 39.0 13 38.49763093214591 39.0 39.0 39.0 37.0 39.0 14 40.0811966835045 41.0 40.0 41.0 38.0 41.0 15 40.102566174299554 41.0 40.0 41.0 38.0 41.0 16 40.10300856654936 41.0 40.0 41.0 38.0 41.0 17 40.1007906202868 41.0 40.0 41.0 38.0 41.0 18 40.08384904199883 41.0 40.0 41.0 38.0 41.0 19 40.119634435373825 41.0 40.0 41.0 38.0 41.0 20 40.09143205413644 41.0 40.0 41.0 38.0 41.0 21 40.05437783789392 41.0 40.0 41.0 38.0 41.0 22 40.02655500626432 41.0 40.0 41.0 38.0 41.0 23 39.98524095664456 41.0 40.0 41.0 38.0 41.0 24 39.99052422733475 41.0 40.0 41.0 38.0 41.0 25 39.95142164021291 41.0 40.0 41.0 38.0 41.0 26 39.88269572989235 41.0 40.0 41.0 38.0 41.0 27 39.85165695099471 41.0 40.0 41.0 38.0 41.0 28 39.820048099558704 41.0 40.0 41.0 38.0 41.0 29 39.76429620230942 41.0 40.0 41.0 38.0 41.0 30 39.69151793908054 41.0 40.0 41.0 37.0 41.0 31 39.630217435541404 41.0 40.0 41.0 37.0 41.0 32 39.55713692912946 41.0 40.0 41.0 37.0 41.0 33 39.451080993193045 41.0 40.0 41.0 36.0 41.0 34 39.39918593841022 41.0 40.0 41.0 36.0 41.0 35 39.34947591231556 41.0 39.0 41.0 36.0 41.0 36 39.313212715360734 41.0 39.0 41.0 35.0 41.0 37 39.2128250859847 41.0 39.0 41.0 35.0 41.0 38 39.17065817193747 41.0 39.0 41.0 35.0 41.0 39 39.09558116476343 41.0 39.0 41.0 35.0 41.0 40 39.02900586930326 41.0 39.0 41.0 35.0 41.0 41 38.92817135891727 41.0 39.0 41.0 35.0 41.0 42 38.807606253940136 41.0 39.0 41.0 35.0 41.0 43 37.62465536297112 40.0 37.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 3.0 14 2.0 15 0.0 16 5.0 17 10.0 18 23.0 19 40.0 20 76.0 21 170.0 22 308.0 23 542.0 24 965.0 25 1404.0 26 2087.0 27 2891.0 28 4235.0 29 5960.0 30 7852.0 31 9944.0 32 12431.0 33 16198.0 34 24270.0 35 38169.0 36 64088.0 37 136229.0 38 343704.0 39 1333401.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.73483397572478 16.922725495359618 11.765339589667473 26.577100939248123 2 18.499377558593284 19.479672899060752 34.80420028249264 27.21674925985333 3 19.536829778235298 20.69887002944627 29.65738790069666 30.10691229162178 4 14.491862376608971 14.41166319535882 33.40615099790126 37.69032343013095 5 16.185970330292946 34.75861442946861 33.426749419453685 15.628665820784754 6 37.11551275605883 33.22869534685148 14.449867531700622 15.205924365389064 7 31.50426332463511 29.40915946470039 19.831043068157335 19.255534142507162 8 28.592205118383568 33.30455539329519 18.876533160964946 19.2267063273563 9 27.222534772928586 13.51136753569063 18.33728344226058 40.92881424912021 10 16.56177930462123 25.68533392385467 32.977324778754 24.775561992770104 11 37.375761094220074 20.167650203889462 21.177870611987583 21.278718089902885 12 22.617216489909268 23.864842434543903 29.09404850254961 24.423892572997215 13 32.347501855354196 18.472245497274827 23.42220080917383 25.758051838197154 14 23.06609250436906 19.20067151851763 25.03291757439372 32.70031840271959 15 26.599444989745674 26.476203586220105 21.190489015505175 25.733862408529045 16 26.05361175616257 24.72169687103493 23.40973203099439 25.814959341808112 17 25.333115877841884 25.231819523912126 24.579802175352917 24.855262422893077 18 25.506731145212385 24.19431742915739 25.075411170429245 25.223540255200977 19 26.22468339278447 24.295264657298127 24.991471355725263 24.488580594192143 20 25.689872559111983 24.170028249263844 24.87895310143401 25.261146090190163 21 25.533763456305415 24.530326063536904 24.828329862025488 25.107580618132197 22 25.91919832738822 24.17950452068022 24.29421727993105 25.60707987200051 23 25.394611891822876 24.07880666810307 24.61396662756458 25.912614812509478 24 25.43660673673123 24.294366905269204 24.49526385929632 25.773762498703245 25 25.549474116811506 23.789531014340092 24.532271192932896 26.128723675915506 26 25.12149577458045 24.238556654138037 25.053366370608 25.586581200673514 27 25.71904950005187 24.30204767262774 24.701347825046085 25.277555002274305 28 25.462940796246198 24.34758365053905 24.733417522523602 25.456058030691146 29 25.28453751805479 24.633417921524504 24.810474571672533 25.271569988748176 30 25.0884784499613 24.639801935952374 24.80074892469257 25.470970689393756 31 25.34827791210808 23.93950547828238 24.832369746155628 25.87984686345391 32 24.650674710524846 24.41197242105767 24.947531381420923 25.98982148699656 33 25.085934819212692 23.957161268184464 25.08683257124161 25.870071341361232 34 25.375659348990126 23.801451166279637 25.375260348088386 25.447629136641847 35 24.924588829570755 24.084342805614742 25.47800308028696 25.513065284527542 36 24.821048095568695 23.503746618467357 25.82059522954522 25.854610056418725 37 24.62833066002729 23.183498519706657 25.900445285006345 26.28772553525971 38 24.056512492718234 23.20539369418975 26.766925618251896 25.97116819484012 39 23.957610144198927 22.899858753680782 27.06822117417985 26.074309927940437 40 23.914518046810787 22.975319799222746 27.50258353083878 25.607578623127687 41 23.59940708466001 22.76200394212891 27.891609410037265 25.74697956317381 42 23.210929831701417 23.032775929073598 27.828417642223872 25.92787659700111 43 22.87108081364264 22.686642646812384 28.02637196460064 26.41590457494434 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 99.0 1 128.0 2 157.0 3 625.0 4 1093.0 5 1093.0 6 1374.5 7 1656.0 8 1583.5 9 1511.0 10 1960.5 11 2410.0 12 2410.0 13 3775.5 14 5141.0 15 8210.5 16 11280.0 17 9870.0 18 8460.0 19 8460.0 20 9408.5 21 10357.0 22 9740.5 23 9124.0 24 11179.0 25 13234.0 26 13234.0 27 16271.5 28 19309.0 29 22507.0 30 25705.0 31 30669.5 32 35634.0 33 35634.0 34 41810.0 35 47986.0 36 55372.0 37 62758.0 38 72160.0 39 81562.0 40 81562.0 41 90531.5 42 99501.0 43 109242.5 44 118984.0 45 129258.0 46 139532.0 47 139532.0 48 151507.5 49 163483.0 50 170640.5 51 177798.0 52 178851.0 53 179904.0 54 179904.0 55 174689.5 56 169475.0 57 159007.0 58 148539.0 59 137798.5 60 127058.0 61 127058.0 62 113668.5 63 100279.0 64 86608.0 65 72937.0 66 63337.5 67 53738.0 68 53738.0 69 45685.0 70 37632.0 71 32304.0 72 26976.0 73 22603.0 74 18230.0 75 18230.0 76 15543.0 77 12856.0 78 10728.0 79 8600.0 80 7255.0 81 5910.0 82 5910.0 83 4642.0 84 3374.0 85 2640.5 86 1907.0 87 1249.5 88 592.0 89 592.0 90 379.0 91 166.0 92 102.0 93 38.0 94 27.5 95 17.0 96 17.0 97 10.5 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2005008.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.37867660312664 #Duplication Level Percentage of deduplicated Percentage of total 1 84.7951026254983 54.589964894558896 2 8.010006326199406 10.3134721372678 3 2.6398323342437435 5.098467363982646 4 1.2962491393832416 3.3380321656573972 5 0.751576437591046 2.419274820910197 6 0.4848017692289224 1.8726537790687454 7 0.35097596112477214 1.5816757527706278 8 0.262974806666306 1.354397602651189 9 0.21058734455944242 1.2201601096893187 >10 1.1187768800902305 12.897466579226464 >50 0.05941577603518044 2.592670413049229 >100 0.01907816173878171 1.9147201101550018 >500 3.1121882029869647E-4 0.13293790313225504 >1k 2.3341411522401123E-4 0.371915573005636 >5k 7.78047050746704E-5 0.30219079487447836 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6033 0.3008965550262144 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 2983 0.1487774612370624 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 2816 0.14044831741319735 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.987511271775474E-5 2 0.0 0.0 0.0 0.0 4.987511271775474E-5 3 0.0 0.0 0.0 0.0 4.987511271775474E-5 4 0.0 0.0 0.0 0.0 4.987511271775474E-5 5 0.0 0.0 0.0 0.0 4.987511271775474E-5 6 0.0 0.0 0.0 0.0 1.4962533815326422E-4 7 0.0 0.0 0.0 0.0 1.4962533815326422E-4 8 0.0 0.0 0.0 4.987511271775474E-5 1.4962533815326422E-4 9 0.0 0.0 0.0 1.4962533815326422E-4 2.493755635887737E-4 10 4.987511271775474E-5 0.0 0.0 1.4962533815326422E-4 2.493755635887737E-4 11 4.987511271775474E-5 0.0 0.0 3.491257890242832E-4 2.493755635887737E-4 12 4.987511271775474E-5 0.0 0.0 5.486262398953022E-4 4.488760144597927E-4 13 4.987511271775474E-5 0.0 0.0 5.985013526130569E-4 4.488760144597927E-4 14 4.987511271775474E-5 0.0 0.0 8.478769162018307E-4 4.987511271775474E-4 15 4.987511271775474E-5 0.0 0.0 0.0012468778179438686 4.987511271775474E-4 16 4.987511271775474E-5 0.0 0.0 0.0019950045087101897 5.985013526130569E-4 17 4.987511271775474E-5 0.0 0.0 0.003441382777525077 5.985013526130569E-4 18 4.987511271775474E-5 0.0 0.0 0.004139634355573644 5.985013526130569E-4 19 4.987511271775474E-5 0.0 0.0 0.005835388187977305 5.985013526130569E-4 20 4.987511271775474E-5 0.0 0.0 0.007730642471251985 6.982515780485664E-4 21 4.987511271775474E-5 0.0 0.0 0.01082289945975278 6.982515780485664E-4 22 4.987511271775474E-5 0.0 0.0 0.017605914789367422 6.982515780485664E-4 23 4.987511271775474E-5 0.0 0.0 0.0231420523010382 7.481266907663211E-4 24 4.987511271775474E-5 0.0 0.0 0.031920072139363036 7.481266907663211E-4 25 4.987511271775474E-5 0.0 0.0 0.038254211454517885 7.980018034840758E-4 26 4.987511271775474E-5 0.0 0.0 0.046832730841971704 8.478769162018307E-4 27 4.987511271775474E-5 0.0 0.0 0.06603464923830728 8.977520289195854E-4 28 4.987511271775474E-5 0.0 0.0 0.1571564801736452 8.977520289195854E-4 29 4.987511271775474E-5 0.0 0.0 0.30568456584711884 8.977520289195854E-4 30 4.987511271775474E-5 0.0 0.0 0.49211773718608604 8.977520289195854E-4 31 4.987511271775474E-5 0.0 0.0 0.9685248138660794 8.977520289195854E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATACG 80 1.6176493E-5 18.5 2 GTATAGA 190 0.0 17.526316 1 CGCGTAT 65 0.0015804888 17.076923 7 TATACAC 850 0.0 16.541178 37 ATACGCG 75 0.0041058226 14.8 4 TATCGCA 75 0.0041058226 14.8 8 TATACGC 125 2.961222E-6 14.799999 3 GGACCGT 215 1.2732926E-11 14.627907 6 CTTATAC 2235 0.0 14.485459 37 ATAAGAC 180 3.3342076E-9 14.388888 3 GTTCTAA 195 6.730261E-10 14.23077 1 ATTAGAC 110 2.4577897E-4 13.454545 3 TCTTATA 3450 0.0 13.137682 37 TAGACAG 315 0.0 12.920634 5 TATACTG 230 5.7661964E-10 12.869565 5 GTGTTAG 245 1.1459633E-10 12.836736 1 ATAGGAC 245 1.1459633E-10 12.836736 3 TATGCCG 130 7.002884E-5 12.807693 5 CCCTATA 275 3.6379788E-12 12.781818 2 TAGGGTG 335 0.0 12.701492 5 >>END_MODULE