##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727603.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5210294 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.15838204139728 34.0 33.0 34.0 31.0 34.0 2 33.33015449799954 34.0 33.0 34.0 31.0 34.0 3 33.41980663663125 34.0 34.0 34.0 31.0 34.0 4 36.61025097624049 37.0 37.0 37.0 35.0 37.0 5 36.5952675607173 37.0 37.0 37.0 35.0 37.0 6 36.62885760381276 37.0 37.0 37.0 35.0 37.0 7 36.63391317265398 37.0 37.0 37.0 35.0 37.0 8 36.61343620916593 37.0 37.0 37.0 35.0 37.0 9 38.29859466663493 39.0 39.0 39.0 37.0 39.0 10 38.39407296402084 39.0 39.0 39.0 37.0 39.0 11 38.49379171309719 39.0 39.0 39.0 37.0 39.0 12 38.47114212748839 39.0 39.0 39.0 37.0 39.0 13 38.50929064655469 39.0 39.0 39.0 37.0 39.0 14 40.09195239270567 41.0 40.0 41.0 38.0 41.0 15 40.11418703052073 41.0 40.0 41.0 38.0 41.0 16 40.111860866200644 41.0 40.0 41.0 38.0 41.0 17 40.110248673107506 41.0 40.0 41.0 38.0 41.0 18 40.094591399256934 41.0 40.0 41.0 38.0 41.0 19 40.12885568453527 41.0 40.0 41.0 38.0 41.0 20 40.10397071643174 41.0 40.0 41.0 38.0 41.0 21 40.06533623630452 41.0 40.0 41.0 38.0 41.0 22 40.03887074318647 41.0 40.0 41.0 38.0 41.0 23 39.994987422974596 41.0 40.0 41.0 38.0 41.0 24 40.00130530062219 41.0 40.0 41.0 38.0 41.0 25 39.96207929917198 41.0 40.0 41.0 38.0 41.0 26 39.894456435663706 41.0 40.0 41.0 38.0 41.0 27 39.86178476684809 41.0 40.0 41.0 38.0 41.0 28 39.82468455714783 41.0 40.0 41.0 38.0 41.0 29 39.76465473925272 41.0 40.0 41.0 38.0 41.0 30 39.68905209571667 41.0 40.0 41.0 37.0 41.0 31 39.61770257110251 41.0 40.0 41.0 37.0 41.0 32 39.53892179596775 41.0 40.0 41.0 37.0 41.0 33 39.43567330365619 41.0 40.0 41.0 36.0 41.0 34 39.37530511713926 41.0 40.0 41.0 36.0 41.0 35 39.316040323252395 41.0 39.0 41.0 35.0 41.0 36 39.27532630596277 41.0 39.0 41.0 35.0 41.0 37 39.168691824300126 41.0 39.0 41.0 35.0 41.0 38 39.12469334743874 41.0 39.0 41.0 35.0 41.0 39 39.04477386496808 41.0 39.0 41.0 35.0 41.0 40 38.97787360943548 41.0 39.0 41.0 35.0 41.0 41 38.873332099877665 41.0 39.0 41.0 35.0 41.0 42 38.74693443402618 41.0 39.0 41.0 35.0 41.0 43 37.57454780862654 40.0 37.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 5.0 11 2.0 12 7.0 13 5.0 14 5.0 15 10.0 16 17.0 17 32.0 18 53.0 19 107.0 20 227.0 21 440.0 22 844.0 23 1471.0 24 2379.0 25 3715.0 26 5353.0 27 7619.0 28 10823.0 29 15222.0 30 20695.0 31 26313.0 32 32530.0 33 43483.0 34 64413.0 35 102271.0 36 170755.0 37 358467.0 38 872370.0 39 3470660.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.3942714173135 16.345104518094374 11.406419676125761 26.854204388466368 2 18.40773284578567 19.406601623631985 34.83647947697385 27.34918605360849 3 19.33931175476854 20.49070551489033 29.72477176911706 30.445210961224067 4 14.254243618498302 14.000994953451762 33.5003168727139 38.24444455533603 5 16.063469738943713 35.05447101449553 33.451874308820194 15.430184937740558 6 37.38760231188489 33.36790591855277 14.218468286050653 15.02602348351168 7 31.831006081422657 29.709052886459 19.51544385019348 18.94449718192486 8 29.002912311666094 33.395466743335405 18.612941995211788 18.98867894978671 9 27.794727130561153 13.159756436009177 17.698982053603885 41.34653437982578 10 16.280194553320793 25.84451088556615 32.82357962909578 25.051714932017273 11 37.91866639387336 19.80857510152018 20.991982410205644 21.280776094400817 12 22.732076155395454 23.750387214233974 29.221652367409597 24.295884262960975 13 32.630404349543426 18.194117260945355 23.209419660387688 25.966058729123535 14 23.006321716202578 18.739172875849235 25.227098509220404 33.02740689872779 15 26.76912281725369 26.263393198157342 21.234886169571237 25.732597815017733 16 26.098296948310402 24.721963866146517 23.2675353828402 25.912203802702884 17 25.598325161689534 24.755436065603973 24.540381022644787 25.105857750061706 18 25.62757495066497 24.098333030727247 24.9089590721752 25.365132946432585 19 26.434496786553694 24.061271782360073 24.94970533332668 24.554526097759553 20 25.775992679107933 23.840286171951142 24.89550493695749 25.488216211983435 21 25.589976304600086 24.372924061482905 24.921933388019944 25.115166245897065 22 26.289130709322738 23.9346954317741 24.206158040218074 25.57001581868509 23 25.486296934491605 23.93657632371609 24.560187966360438 26.016938775431864 24 25.395630265777708 23.97553765680017 24.60174032405849 26.027091753363628 25 25.55569800859606 23.535811990647744 24.61601974859768 26.292470252158516 26 25.147198987235654 23.945750470127024 25.129426477661337 25.77762406497599 27 25.93352697563708 24.220802127480713 24.49934686986953 25.346324027012678 28 25.361006499825155 24.451652824197637 24.606692059987402 25.58064861598981 29 25.34753317183253 24.599072528344852 24.623946364638925 25.429447935183696 30 25.411099642361833 24.538001118554924 24.579227199079362 25.471672040003885 31 25.273372289548345 23.819730710013676 24.73800902597819 26.168887974459793 32 24.64006829557027 24.273927728454478 25.014001129302876 26.072002846672376 33 25.148081854881895 23.715878604930932 25.22654191874777 25.909497621439403 34 25.299532041761942 23.688356165698135 25.650932557740504 25.36117923479942 35 25.02405814336005 23.803896670706106 25.59012984679943 25.581915339134415 36 24.666669481606988 23.27720854139901 26.056188000139723 25.999933976854283 37 24.5047784251714 23.07213374139732 25.93178043311951 26.49130740031177 38 23.962544148180505 22.85928586755373 26.85621962983279 26.32195035443298 39 23.79652664513749 22.513259328552284 27.479600959178118 26.210613067132105 40 23.860304236190892 22.48074676784074 27.83178837892833 25.827160617040036 41 23.338951698311075 22.37796945815342 28.362929232016466 25.920149611519044 42 22.826773306842185 22.58277555930625 28.422868268086216 26.167582865765347 43 22.433148686043435 22.155793895699553 28.556526752617028 26.85453066563998 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 628.0 1 711.0 2 794.0 3 2641.0 4 4488.0 5 4488.0 6 5387.0 7 6286.0 8 5806.5 9 5327.0 10 6972.0 11 8617.0 12 8617.0 13 12972.5 14 17328.0 15 26712.5 16 36097.0 17 31566.0 18 27035.0 19 27035.0 20 28787.5 21 30540.0 22 28060.0 23 25580.0 24 30637.5 25 35695.0 26 35695.0 27 42446.5 28 49198.0 29 57188.5 30 65179.0 31 75620.5 32 86062.0 33 86062.0 34 99032.0 35 112002.0 36 129187.5 37 146373.0 38 168460.0 39 190547.0 40 190547.0 41 215043.0 42 239539.0 43 266300.0 44 293061.0 45 323434.5 46 353808.0 47 353808.0 48 387629.0 49 421450.0 50 442378.5 51 463307.0 52 469747.5 53 476188.0 54 476188.0 55 463517.5 56 450847.0 57 424969.0 58 399091.0 59 370656.5 60 342222.0 61 342222.0 62 305176.5 63 268131.0 64 232379.0 65 196627.0 66 169798.5 67 142970.0 68 142970.0 69 120207.5 70 97445.0 71 85237.0 72 73029.0 73 61149.5 74 49270.0 75 49270.0 76 42468.5 77 35667.0 78 30274.0 79 24881.0 80 20803.5 81 16726.0 82 16726.0 83 13305.0 84 9884.0 85 7876.0 86 5868.0 87 3885.0 88 1902.0 89 1902.0 90 1182.0 91 462.0 92 271.0 93 80.0 94 61.0 95 42.0 96 42.0 97 27.0 98 12.0 99 10.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5210294.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.64133631293528 #Duplication Level Percentage of deduplicated Percentage of total 1 82.25808246837168 44.12433466143091 2 8.833469268106608 9.476781916409697 3 3.019848616593868 4.859661457705921 4 1.4859826643304053 3.188403834101555 5 0.8925327516113993 2.3938324749748303 6 0.6084857435040885 1.9583993045357568 7 0.4341546916039806 1.6302046476917478 8 0.33780928984896097 1.449643338113756 9 0.26220287957431027 1.2658421560919082 >10 1.662129580203035 16.928266831919263 >50 0.141193852005984 5.1961236848658485 >100 0.06174141885644871 5.748821396035194 >500 0.001864733359765925 0.6332846901703538 >1k 3.586014497039125E-4 0.28507545951154956 >5k 1.0758043490778564E-4 0.47829968290138647 >10k+ 3.586014496926188E-5 0.38302446354041453 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19912 0.3821665341725438 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9713 0.18641942278113288 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 9598 0.18421225366553212 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5554 0.10659667189605808 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 1.9192774918267567E-5 0.0 0.0 0.0 0.0 6 1.9192774918267567E-5 0.0 0.0 1.9192774918267567E-5 3.8385549836535134E-5 7 1.9192774918267567E-5 0.0 0.0 1.9192774918267567E-5 3.8385549836535134E-5 8 1.9192774918267567E-5 0.0 0.0 3.8385549836535134E-5 3.8385549836535134E-5 9 1.9192774918267567E-5 0.0 0.0 5.7578324754802704E-5 5.7578324754802704E-5 10 1.9192774918267567E-5 0.0 0.0 3.0708439869228107E-4 5.7578324754802704E-5 11 1.9192774918267567E-5 0.0 0.0 8.060965465672378E-4 5.7578324754802704E-5 12 1.9192774918267567E-5 0.0 0.0 0.0012667231446056595 5.7578324754802704E-5 13 1.9192774918267567E-5 0.0 0.0 0.0014202653439518 9.596387459133784E-5 14 1.9192774918267567E-5 0.0 0.0 0.0017465425175623487 1.7273497426440813E-4 15 1.9192774918267567E-5 0.0 0.0 0.0024566751895382486 2.1112052410094325E-4 16 1.9192774918267567E-5 0.0 0.0 0.0034355067103698945 2.3031329901921082E-4 17 1.9192774918267567E-5 0.0 0.0 0.005354784202196651 2.3031329901921082E-4 18 1.9192774918267567E-5 0.0 0.0 0.006084109649090819 2.6869884885574594E-4 19 1.9192774918267567E-5 0.0 0.0 0.008387242639282927 2.6869884885574594E-4 20 1.9192774918267567E-5 0.0 0.0 0.011957098774080695 3.0708439869228107E-4 21 3.8385549836535134E-5 0.0 0.0 0.01783008789907057 3.2627717361054866E-4 22 3.8385549836535134E-5 0.0 0.0 0.027196162059185142 3.2627717361054866E-4 23 3.8385549836535134E-5 0.0 0.0 0.03374089830631438 3.4546994852881625E-4 24 3.8385549836535134E-5 0.0 0.0 0.04425853896152501 3.4546994852881625E-4 25 3.8385549836535134E-5 0.0 0.0 0.05151340788063015 3.4546994852881625E-4 26 3.8385549836535134E-5 0.0 0.0 0.061493650838129285 3.4546994852881625E-4 27 3.8385549836535134E-5 0.0 0.0 0.0845057879651321 3.646627234470838E-4 28 3.8385549836535134E-5 0.0 0.0 0.19734011170962715 3.838554983653514E-4 29 3.8385549836535134E-5 0.0 0.0 0.37894214798627485 3.838554983653514E-4 30 3.8385549836535134E-5 0.0 0.0 0.5961851672861455 3.838554983653514E-4 31 3.8385549836535134E-5 0.0 0.0 1.2209483764255913 3.838554983653514E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTAA 140 1.873559E-9 17.178572 10 CTTATAC 6735 0.0 16.288792 37 GTACCGT 225 1.8189894E-12 14.8 6 GCGTAAC 170 2.442357E-8 14.147059 11 GTATAAT 605 0.0 14.066115 1 TATACAC 2705 0.0 13.609982 37 TAAGGCG 410 0.0 13.536585 5 TAAGACT 705 0.0 13.120566 4 GTTACGG 690 0.0 12.869565 25 TCTTATA 10225 0.0 12.737409 37 ATTATAC 480 0.0 12.718749 3 TATACCG 205 2.0703737E-8 12.634146 5 GGTATCA 8935 0.0 12.609401 1 TCAATAC 490 0.0 12.459184 3 GTTCTAA 615 0.0 12.333333 1 GTATTCG 330 0.0 12.333333 5 TTATACT 625 0.0 12.135999 4 TACGGAT 945 0.0 11.941799 27 CGTATAG 140 1.4001252E-4 11.892857 1 TAGACAG 815 0.0 11.80368 5 >>END_MODULE