##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727591.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5207159 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.153889673812532 31.0 31.0 33.0 30.0 34.0 2 31.38694401304051 31.0 31.0 34.0 30.0 34.0 3 31.378554793506403 31.0 31.0 34.0 28.0 34.0 4 35.18617100034779 37.0 35.0 37.0 32.0 37.0 5 35.017836789696645 35.0 35.0 37.0 32.0 37.0 6 35.16848189194914 37.0 35.0 37.0 32.0 37.0 7 35.10339668905827 37.0 35.0 37.0 32.0 37.0 8 35.104250129485195 37.0 35.0 37.0 32.0 37.0 9 36.68310819777157 38.0 35.0 39.0 32.0 39.0 10 36.41246349496914 38.0 35.0 39.0 32.0 39.0 11 36.575593524223095 38.0 35.0 39.0 32.0 39.0 12 36.36814892727493 38.0 35.0 39.0 32.0 39.0 13 36.45453403669832 38.0 35.0 39.0 32.0 39.0 14 37.36119465528132 39.0 36.0 40.0 32.0 41.0 15 37.375671839480994 39.0 36.0 40.0 32.0 41.0 16 37.25041082863035 39.0 36.0 40.0 32.0 41.0 17 37.24167132211634 39.0 36.0 40.0 32.0 41.0 18 37.17777717177447 39.0 36.0 40.0 31.0 41.0 19 37.17958641170742 39.0 36.0 40.0 31.0 41.0 20 37.09614244542946 39.0 36.0 40.0 31.0 41.0 21 36.99088620109353 39.0 36.0 40.0 31.0 41.0 22 36.88473522702111 39.0 36.0 40.0 31.0 41.0 23 36.768160526690274 39.0 36.0 40.0 30.0 41.0 24 36.64171825749896 38.0 35.0 40.0 30.0 41.0 25 36.904993682735636 39.0 36.0 40.0 31.0 41.0 26 36.789367676308714 39.0 36.0 40.0 30.0 41.0 27 36.70968507011213 39.0 35.0 40.0 30.0 41.0 28 36.609560222762546 39.0 35.0 40.0 30.0 41.0 29 36.509827335789055 39.0 35.0 40.0 30.0 41.0 30 36.377803328071984 38.0 35.0 40.0 30.0 41.0 31 36.22213341286486 38.0 35.0 40.0 30.0 41.0 32 36.090080214566136 38.0 35.0 40.0 30.0 41.0 33 35.96737126713435 38.0 35.0 40.0 29.0 41.0 34 35.84662980331501 38.0 35.0 40.0 29.0 41.0 35 35.70082572857867 38.0 34.0 40.0 28.0 41.0 36 35.56786570181552 38.0 34.0 40.0 27.0 41.0 37 35.450999095668095 38.0 34.0 40.0 27.0 41.0 38 35.31327466666564 38.0 34.0 40.0 26.0 41.0 39 35.10700710310555 38.0 34.0 40.0 26.0 41.0 40 34.92550294700047 38.0 33.0 40.0 25.0 41.0 41 34.765281797617476 38.0 33.0 40.0 24.0 41.0 42 34.5530197944791 38.0 33.0 40.0 24.0 41.0 43 34.32229858930753 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 5.0 13 9.0 14 16.0 15 59.0 16 121.0 17 280.0 18 626.0 19 1401.0 20 2725.0 21 5173.0 22 9249.0 23 14726.0 24 22681.0 25 33755.0 26 48365.0 27 66730.0 28 89585.0 29 117245.0 30 147527.0 31 183470.0 32 226165.0 33 278055.0 34 348703.0 35 442609.0 36 594518.0 37 843030.0 38 1124116.0 39 606212.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.056564433695996 22.92553386597183 14.61628116214619 22.401620538185984 2 22.760587875269415 25.089016870811896 29.46172759464422 22.688667659274472 3 24.07122578742074 24.5753970639268 28.96823392563968 22.38514322301278 4 18.979735398899862 18.609956024004646 30.507653021542076 31.902655555553423 5 15.343529936381817 37.83425856594738 32.263274465020174 14.558937032650626 6 34.60871849697695 35.37431831829986 13.420081852695489 16.596881332027692 7 28.73484370267933 31.131179209238663 20.48706405930758 19.646913028774424 8 28.50450696819513 34.36278784650133 18.19909858715664 18.9336065981469 9 26.774849778929354 13.595110116668224 18.94678076855345 40.68325933584897 10 17.50866451360521 28.661924861522376 31.983332946046012 21.8460776788264 11 35.81296442071387 22.031418668029918 20.033669031423855 22.121947879832362 12 21.555055261419902 26.77508023088982 29.220137122757343 22.449727384932935 13 32.32313436175081 19.600265711110413 24.160583535090822 23.916016392047947 14 21.975918154218068 21.57980964283979 26.783107640845998 29.661164562096143 15 25.876106337448118 27.864369035015063 23.09274596761881 23.16677865991801 16 23.5387281241076 25.337924192443516 26.352661787358517 24.770685896090363 17 23.83693296094857 26.230906334913147 26.577544492111727 23.354616212026556 18 24.175236438910357 24.081634534301717 27.317736984793434 24.425392041994492 19 24.794921760599205 24.58643955369905 28.495672976377328 22.12296570932441 20 24.132180330963582 24.236978359984782 28.439500311014125 23.19134099803751 21 23.664881368131834 24.84963489687947 28.561140537479268 22.92434319750943 22 23.70784145442841 24.88132204144333 27.962272709552366 23.44856379457589 23 23.340885116048884 24.85374462350775 28.183506591598224 23.62186366884514 24 23.186213441917175 25.186939749679237 28.251413102615075 23.375433705788513 25 23.880392359826157 24.388980632241115 28.230691630503312 23.49993537742942 26 23.2293463671841 25.280829719238458 28.340137107393875 23.149686806183563 27 23.8142718515029 25.072405125328416 28.19018969845169 22.92313332471699 28 23.114888560153435 25.725698024584997 28.235243056722485 22.92417035853908 29 23.292951108272284 25.87574145517738 28.11729006162477 22.71401737492556 30 23.407908227883958 25.506691844823635 27.939746030416966 23.145653896875437 31 23.35069852869866 25.348313734994456 28.473991287763635 22.826996448543248 32 23.063670611940214 25.676285283395416 27.870956120218338 23.38908798444603 33 22.91470262383 25.809025612622925 28.023400092065557 23.25287167148151 34 23.43982582440828 25.886399858348863 27.84683548168973 22.82693883555313 35 23.221549409188388 26.13642103112273 27.859644769825543 22.782384789863343 36 23.330034669577017 26.12943065498864 27.693969014581654 22.846565660852683 37 23.274092456174277 26.09203982440329 27.686632960506874 22.947234758915563 38 23.269252965004526 26.212354952095758 27.765601165626013 22.7527909172737 39 22.967610553086626 26.82585647951215 27.40943766072824 22.797095306672986 40 23.41793288816416 26.69236718141313 27.395898608050956 22.493801322371755 41 23.19637253250765 26.564543160675523 27.115188915875237 23.123895390941588 42 23.13643581845686 26.76680316464314 26.837839981456295 23.258921035443702 43 23.34142283728997 26.494082473763527 26.9224926682669 23.242002020679607 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 763.0 1 886.5 2 1010.0 3 1594.5 4 2179.0 5 2179.0 6 4305.0 7 6431.0 8 6083.5 9 5736.0 10 8503.5 11 11271.0 12 11271.0 13 28802.0 14 46333.0 15 71827.5 16 97322.0 17 78822.5 18 60323.0 19 60323.0 20 76704.5 21 93086.0 22 69847.0 23 46608.0 24 50925.0 25 55242.0 26 55242.0 27 65678.5 28 76115.0 29 90925.5 30 105736.0 31 120910.5 32 136085.0 33 136085.0 34 148406.0 35 160727.0 36 178791.0 37 196855.0 38 216615.5 39 236376.0 40 236376.0 41 258280.5 42 280185.0 43 302799.0 44 325413.0 45 343498.0 46 361583.0 47 361583.0 48 386941.0 49 412299.0 50 422224.0 51 432149.0 52 432203.0 53 432257.0 54 432257.0 55 409260.0 56 386263.0 57 351435.5 58 316608.0 59 289361.0 60 262114.0 61 262114.0 62 232710.5 63 203307.0 64 175009.5 65 146712.0 66 125278.0 67 103844.0 68 103844.0 69 89407.5 70 74971.0 71 63692.0 72 52413.0 73 42156.0 74 31899.0 75 31899.0 76 26180.0 77 20461.0 78 16228.5 79 11996.0 80 9291.5 81 6587.0 82 6587.0 83 5153.0 84 3719.0 85 2997.0 86 2275.0 87 1687.5 88 1100.0 89 1100.0 90 802.0 91 504.0 92 344.0 93 184.0 94 137.0 95 90.0 96 90.0 97 54.0 98 18.0 99 14.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5207159.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.490581456174155 #Duplication Level Percentage of deduplicated Percentage of total 1 79.01726187436554 39.89627497111497 2 10.847904525380686 10.954340141350674 3 3.758659401692587 5.693306960615231 4 1.778197008359831 3.5912880358286894 5 1.0089811488915028 2.54720224429253 6 0.6696911422031776 2.0287857099532705 7 0.48310410428001976 1.7074544990273672 8 0.36143271805799243 1.4599158473626794 9 0.2725535223664795 1.2385247239990727 >10 1.6223749240404393 15.167275370610724 >50 0.11831976210344777 4.086392724244386 >100 0.055727923156347156 5.082725593724728 >500 0.0034448841441329686 1.2017703332359209 >1k 0.0021199260263594553 2.1277860304483753 >5k 7.571164379838402E-5 0.2875071411115968 >10k+ 1.5142328759676805E-4 2.929449673079968 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 54726 1.050976165698032 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 52676 1.0116072891186922 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23898 0.458945079264912 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21965 0.42182310930010014 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7953 0.15273203679780087 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7089 0.13613949564436192 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.344303102709174E-4 0.0 0.0 0.0 0.0 2 0.0011714641323608518 0.0 0.0 0.0 0.0 3 0.0017091853734445212 0.0 0.0 0.0 0.0 4 0.0018052070236380337 0.0 0.0 0.0 1.9204330038702488E-5 5 0.005665277361417234 0.0 0.0 3.4567794069664473E-4 3.8408660077404975E-5 6 0.007547301705210077 0.0 0.0 5.761299011610746E-4 5.761299011610746E-5 7 0.0085075182071452 0.0 0.0 6.529472213158845E-4 7.681732015480995E-5 8 0.010716016161595987 0.0 0.0 0.001113851142244744 7.681732015480995E-5 9 0.011311350392795764 0.0 0.0 0.0012482814525156616 9.602165019351243E-5 10 0.016534928163322842 0.0 0.0 0.0019588416639476536 9.602165019351243E-5 11 0.017783209615838503 0.0 0.0 0.002131680634295976 9.602165019351243E-5 12 0.018436156837154386 0.0 0.0 0.002227702284489488 9.602165019351243E-5 13 0.019607620969515238 0.0 0.0 0.0024581542449539184 9.602165019351243E-5 14 0.021624075623579 0.0 0.0 0.0029382624959214806 1.344303102709174E-4 15 0.023486895637333142 0.0 0.0 0.003437575076927745 1.536346403096199E-4 16 0.02494642472027453 0.0 0.0 0.0038024573476630923 2.3045196046442984E-4 17 0.02533051132104858 0.0 0.0 0.003840866007740497 2.3045196046442984E-4 18 0.02586823256213225 0.0 0.0 0.004052113638166224 2.688606205418348E-4 19 0.026982083704376995 0.0 0.0 0.0043593829187854646 2.688606205418348E-4 20 0.03404927715861951 0.0 1.9204330038702488E-5 0.0065486765431975475 2.688606205418348E-4 21 0.0494319455196202 0.0 1.9204330038702488E-5 0.011522598023221493 2.880649505805373E-4 22 0.050411366351594024 0.0 1.9204330038702488E-5 0.012021910604227757 3.072692806192398E-4 23 0.05131396986341304 0.0 1.9204330038702488E-5 0.012770879475737153 3.2647361065794227E-4 24 0.0533112201874381 0.0 1.9204330038702488E-5 0.013999956598214113 3.2647361065794227E-4 25 0.05430984534945063 0.0 1.9204330038702488E-5 0.014652903819529998 3.2647361065794227E-4 26 0.060186370341293594 0.0 1.9204330038702488E-5 0.01791763992610942 3.2647361065794227E-4 27 0.061549877774041466 0.0 1.9204330038702488E-5 0.019492394989283023 3.2647361065794227E-4 28 0.06437291428973073 0.0 1.9204330038702488E-5 0.023371669657100927 3.4567794069664473E-4 29 0.06462257058023387 0.0 1.9204330038702488E-5 0.029305807639059996 3.4567794069664473E-4 30 0.06573642172247861 0.0 1.9204330038702488E-5 0.03721799161500542 3.4567794069664473E-4 31 0.06754162874611665 0.0 1.9204330038702488E-5 0.06035920931164192 3.4567794069664473E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27900 0.0 12.552151 1 ATACTGT 1080 0.0 11.134259 6 TAGACAG 805 0.0 10.801243 5 CGTACGT 120 0.007168096 10.791667 10 TATATCG 155 3.600789E-4 10.741936 4 AACGCAG 38020 0.0 10.6465025 5 TATACTG 755 0.0 10.536425 5 TTACACT 705 0.0 10.496454 4 GTATAGA 355 4.5474735E-11 10.422535 1 TACACTC 765 0.0 10.398693 5 TACGCTG 395 3.6379788E-12 10.303798 5 GTATCAA 34180 0.0 10.278379 2 TTACACC 900 0.0 10.277778 4 GGGTAAG 2995 0.0 10.191986 1 TAAGGTG 680 0.0 10.066176 5 CTACACT 1105 0.0 10.045248 4 TTTACAC 800 0.0 9.94375 3 TACTATA 810 0.0 9.592592 2 GTTACAC 485 0.0 9.536082 3 ATACCGT 350 4.083631E-9 9.514286 6 >>END_MODULE