##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727568.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1310537 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4818116543066 34.0 31.0 34.0 31.0 34.0 2 32.659857752966914 34.0 31.0 34.0 31.0 34.0 3 32.750796047727 34.0 31.0 34.0 31.0 34.0 4 36.23817946383811 37.0 37.0 37.0 35.0 37.0 5 36.079455215686394 37.0 35.0 37.0 35.0 37.0 6 36.100585485186606 37.0 35.0 37.0 35.0 37.0 7 36.077973380377664 37.0 35.0 37.0 35.0 37.0 8 36.06289177642447 37.0 35.0 37.0 35.0 37.0 9 37.765254243107975 39.0 37.0 39.0 35.0 39.0 10 37.725476655752566 39.0 37.0 39.0 35.0 39.0 11 37.80125017454677 39.0 37.0 39.0 35.0 39.0 12 37.769742479609505 39.0 37.0 39.0 35.0 39.0 13 37.806408365425774 39.0 37.0 39.0 35.0 39.0 14 39.14006929983663 40.0 39.0 41.0 36.0 41.0 15 39.149922512679915 40.0 39.0 41.0 36.0 41.0 16 39.13207105179022 40.0 38.0 41.0 36.0 41.0 17 39.14652237975731 40.0 39.0 41.0 36.0 41.0 18 39.114754486138125 40.0 38.0 41.0 36.0 41.0 19 39.146304148604735 40.0 39.0 41.0 36.0 41.0 20 39.12335630356106 40.0 39.0 41.0 36.0 41.0 21 39.102796792459884 40.0 39.0 41.0 36.0 41.0 22 39.070786250216514 40.0 39.0 41.0 36.0 41.0 23 39.02702708889562 40.0 39.0 41.0 36.0 41.0 24 38.9856577876092 40.0 38.0 41.0 36.0 41.0 25 38.92458816500412 40.0 38.0 41.0 35.0 41.0 26 38.817400805929175 40.0 38.0 41.0 35.0 41.0 27 38.769150355922804 40.0 38.0 41.0 35.0 41.0 28 38.70544822465905 40.0 38.0 41.0 35.0 41.0 29 38.62175199937125 40.0 38.0 41.0 35.0 41.0 30 38.567203367779776 40.0 38.0 41.0 35.0 41.0 31 38.49861469000875 40.0 38.0 41.0 34.0 41.0 32 38.408653857159315 40.0 38.0 41.0 34.0 41.0 33 38.36238503758383 40.0 38.0 41.0 34.0 41.0 34 38.32064413290124 40.0 38.0 41.0 34.0 41.0 35 38.30704817948673 40.0 38.0 41.0 34.0 41.0 36 38.25212565536112 40.0 38.0 41.0 34.0 41.0 37 38.22879170904751 40.0 38.0 41.0 34.0 41.0 38 38.19241043938477 40.0 38.0 41.0 34.0 41.0 39 38.146304148604735 40.0 38.0 41.0 34.0 41.0 40 38.09230872535457 40.0 38.0 41.0 33.0 41.0 41 38.041514280024145 40.0 38.0 41.0 33.0 41.0 42 38.00824165971659 40.0 37.0 41.0 33.0 41.0 43 36.901858551113015 39.0 36.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 4.0 13 0.0 14 0.0 15 2.0 16 2.0 17 8.0 18 21.0 19 41.0 20 82.0 21 145.0 22 328.0 23 579.0 24 979.0 25 1552.0 26 2535.0 27 3663.0 28 5389.0 29 7829.0 30 10917.0 31 15153.0 32 20399.0 33 28484.0 34 40627.0 35 58775.0 36 89966.0 37 153520.0 38 362372.0 39 507163.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.399003614548846 16.762060132602134 12.029648914910453 27.80928733793857 2 19.036776527484538 19.496816953660982 34.62572975810679 26.840676760747694 3 20.493507623210945 21.097763741122915 29.04969489606169 29.359033739604453 4 15.923014764176822 14.44323967961225 32.47371115809779 37.16003439811314 5 16.60830636601637 34.80123033535108 32.79663222022728 15.793831078405265 6 37.809005010923 32.129501112902574 14.462163220115112 15.59933065605931 7 30.9195390897014 29.27395411194037 20.028812616507587 19.77769418185065 8 28.126027727565113 33.8527641722439 18.913163077425512 19.108045022765477 9 28.806817358075353 13.665619513222444 17.310842807185146 40.21672032151706 10 17.16861103501847 25.84719088434741 32.33407374229038 24.650124338343748 11 38.24203360912359 20.331284046158178 19.788147911886504 21.638534432831733 12 22.754718104105418 22.96875250374465 28.961486779846734 25.315042612303202 13 32.49400818137909 18.626944527319715 22.51061969253825 26.36842759876295 14 23.74286265858957 18.88561711725804 23.778191687834834 33.59332853631756 15 27.24715135856523 25.951804489304763 20.591024900479727 26.21001925165028 16 26.059699192010605 24.729404816498885 23.071611102929563 26.139284888560947 17 25.87198987895801 24.201071774394773 23.57682385159671 26.3501144950505 18 25.88992145967645 24.41022267971068 24.111261261604973 25.588594599007884 19 27.096754994326755 24.044952565246156 24.020306179833153 24.83798626059394 20 26.153935371530906 23.422841171214547 24.025647501749283 26.397575955505264 21 25.806062705593202 24.3782510528127 24.51109735932675 25.304588882267343 22 26.664947269706996 23.430853154088744 23.360042486400612 26.544157089803644 23 25.99873181756791 23.7971152283377 24.040069070922833 26.164083883171557 24 25.69778647989336 23.501129689585262 24.12324108361687 26.677842746904513 25 26.305476304751412 23.091450298618046 23.685023772697757 26.91804962393278 26 25.92380070154448 23.723557595092696 24.06837807707833 26.284263626284492 27 26.708746109419266 23.924772822133217 23.54897267303403 25.817508395413487 28 26.007888369424137 24.514912589266842 22.994467153540874 26.482731887768146 29 25.960961041160992 24.44692519173438 24.051972588335925 25.540141178768707 30 26.989012900818523 23.666558059787704 23.288163554329255 26.056265485064518 31 26.172172170644554 23.701734479835366 24.096610778635018 26.029482570885065 32 25.67665010602524 23.836641010517063 23.914700615091373 26.572008268366325 33 25.65169850221703 23.473049597226176 24.020840312024767 26.854411588532027 34 26.139666411554956 23.681742674949277 24.70918409781639 25.469406815679374 35 26.04253065728018 23.341576773490562 24.225718159807773 26.39017440942148 36 25.732047244755396 23.165389454857056 24.7627499261753 26.33981337421225 37 25.024779918460904 22.924877359433577 25.377841297117136 26.672501424988383 38 25.74532424494692 22.30070574123432 25.188071759896896 26.765898253921865 39 24.602281354894977 22.81576178314691 26.228484964560327 26.353471897397785 40 25.78103479718619 21.920022097811813 26.29593822990118 26.003004875100817 41 24.702087770127818 22.525193870909405 26.406198375169872 26.3665199837929 42 24.152084221963975 22.486583743915663 26.92155963547767 26.439772398642692 43 23.780251912002484 22.11459882475657 26.575594584510014 27.529554678730932 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 20.0 1 26.0 2 32.0 3 78.0 4 124.0 5 124.0 6 143.0 7 162.0 8 161.5 9 161.0 10 239.0 11 317.0 12 317.0 13 492.5 14 668.0 15 974.5 16 1281.0 17 1251.5 18 1222.0 19 1222.0 20 1548.0 21 1874.0 22 2213.5 23 2553.0 24 3384.0 25 4215.0 26 4215.0 27 5438.0 28 6661.0 29 8427.0 30 10193.0 31 13467.0 32 16741.0 33 16741.0 34 21040.0 35 25339.0 36 29620.0 37 33901.0 38 39737.0 39 45573.0 40 45573.0 41 52414.5 42 59256.0 43 67480.5 44 75705.0 45 86042.5 46 96380.0 47 96380.0 48 107802.5 49 119225.0 50 127097.0 51 134969.0 52 136217.5 53 137466.0 54 137466.0 55 131073.5 56 124681.0 57 116768.0 58 108855.0 59 101608.0 60 94361.0 61 94361.0 62 82766.0 63 71171.0 64 60589.5 65 50008.0 66 41666.5 67 33325.0 68 33325.0 69 27210.0 70 21095.0 71 17256.5 72 13418.0 73 10857.5 74 8297.0 75 8297.0 76 6702.0 77 5107.0 78 4083.0 79 3059.0 80 2396.5 81 1734.0 82 1734.0 83 1262.5 84 791.0 85 580.5 86 370.0 87 265.0 88 160.0 89 160.0 90 103.5 91 47.0 92 29.5 93 12.0 94 8.0 95 4.0 96 4.0 97 3.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1310537.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 70.37051586526988 #Duplication Level Percentage of deduplicated Percentage of total 1 85.11153654259073 59.893427325878775 2 8.470517157471589 11.921493240337904 3 2.611711016888424 5.5136235464834105 4 1.2335319677861964 3.4721712363766444 5 0.70086775779215 2.466021283458431 6 0.4604670741036554 1.944198332618741 7 0.314958828983601 1.5514670690328123 8 0.2092979920602576 1.178272613667639 9 0.15398818192676964 0.9752605019407625 >10 0.6956053813326013 7.9627756511389505 >50 0.024391519435893412 1.1894281508540143 >100 0.012584170871457866 1.716966290157051 >500 5.42408756773083E-4 0.21489475805490355 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.63045988018652E-5 2 0.0 0.0 0.0 7.63045988018652E-5 7.63045988018652E-5 3 0.0 0.0 0.0 7.63045988018652E-5 7.63045988018652E-5 4 0.0 0.0 0.0 3.052183952074608E-4 1.526091976037304E-4 5 0.0 0.0 0.0 3.052183952074608E-4 1.526091976037304E-4 6 0.0 0.0 0.0 3.052183952074608E-4 2.2891379640559557E-4 7 0.0 0.0 0.0 3.052183952074608E-4 2.2891379640559557E-4 8 0.0 0.0 0.0 3.8152299400932594E-4 2.2891379640559557E-4 9 0.0 0.0 0.0 4.5782759281119115E-4 2.2891379640559557E-4 10 0.0 0.0 0.0 6.104367904149216E-4 2.2891379640559557E-4 11 0.0 0.0 0.0 6.104367904149216E-4 2.2891379640559557E-4 12 0.0 0.0 0.0 6.104367904149216E-4 2.2891379640559557E-4 13 0.0 0.0 0.0 6.104367904149216E-4 2.2891379640559557E-4 14 0.0 0.0 0.0 6.867413892167867E-4 2.2891379640559557E-4 15 0.0 0.0 0.0 8.393505868205171E-4 2.2891379640559557E-4 16 0.0 0.0 0.0 8.393505868205171E-4 3.8152299400932594E-4 17 0.0 0.0 0.0 9.156551856223823E-4 3.8152299400932594E-4 18 0.0 0.0 0.0 0.001144568982027978 5.341321916130564E-4 19 0.0 0.0 0.0 0.0012208735808298431 5.341321916130564E-4 20 0.0 0.0 0.0 0.0012971781796317081 6.104367904149216E-4 21 0.0 0.0 0.0 0.0016787011736410342 6.867413892167867E-4 22 0.0 0.0 0.0 0.0025943563592634162 6.867413892167867E-4 23 0.0 0.0 0.0 0.0030521839520746075 8.393505868205171E-4 24 0.0 0.0 0.0 0.004044143736498855 8.393505868205171E-4 25 0.0 0.0 0.0 0.0051124081197249675 8.393505868205171E-4 26 0.0 0.0 0.0 0.007401546083780923 8.393505868205171E-4 27 0.0 0.0 0.0 0.017550057724428993 8.393505868205171E-4 28 0.0 0.0 0.0 0.04860602943678813 8.393505868205171E-4 29 0.0 0.0 0.0 0.0984329324544061 8.393505868205171E-4 30 0.0 0.0 0.0 0.16382597362760457 8.393505868205171E-4 31 0.0 0.0 0.0 0.48781530014032415 8.393505868205171E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 795 0.0 21.176102 37 TATACCG 70 1.21936304E-4 18.5 5 TACTTAC 320 0.0 17.921875 31 GCTTATA 220 0.0 17.65909 1 CTATACT 105 4.7985304E-7 17.619047 4 TATACTA 65 0.001580094 17.076923 5 GTATAGA 120 1.04149876E-7 16.958332 1 TATAGCA 285 0.0 16.877193 4 CTACACG 100 5.8790556E-6 16.65 4 TGTTACG 235 0.0 16.531916 24 GTTACGG 560 0.0 16.517857 25 TCTTATA 1420 0.0 16.415493 37 TAGTACC 80 3.3830185E-4 16.1875 4 GTACTTA 370 0.0 16.0 30 TACGGAT 775 0.0 15.754838 27 CGACTTA 260 0.0 15.653846 19 TACATAT 250 0.0 15.54 35 AGTGTAC 465 0.0 15.516129 27 CTCGTTA 485 0.0 15.257732 22 TTATAGC 275 0.0 14.8 3 >>END_MODULE