##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727558.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1441756 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.138914629105063 31.0 31.0 33.0 28.0 34.0 2 31.317197223385925 31.0 31.0 34.0 28.0 34.0 3 31.412825748601012 31.0 31.0 34.0 28.0 34.0 4 35.25917977799295 37.0 35.0 37.0 33.0 37.0 5 34.23965358909552 35.0 35.0 37.0 30.0 37.0 6 34.182991435444 35.0 35.0 37.0 30.0 37.0 7 34.183812656233094 35.0 35.0 37.0 30.0 37.0 8 34.08580647488202 35.0 33.0 37.0 30.0 37.0 9 35.6678890186689 37.0 35.0 39.0 30.0 39.0 10 35.359818859779324 37.0 34.0 39.0 30.0 39.0 11 35.54397137934574 37.0 35.0 39.0 30.0 39.0 12 35.47119068691235 37.0 35.0 39.0 30.0 39.0 13 35.6139936299901 37.0 35.0 39.0 30.0 39.0 14 36.54569358476746 38.0 36.0 40.0 31.0 41.0 15 36.47824874666726 38.0 35.0 40.0 31.0 41.0 16 36.437692647022104 38.0 35.0 40.0 31.0 41.0 17 36.42709445981151 38.0 35.0 40.0 31.0 41.0 18 36.35945402689498 38.0 35.0 40.0 30.0 41.0 19 36.410984937811946 38.0 35.0 40.0 30.0 41.0 20 36.386717308615324 38.0 35.0 40.0 30.0 41.0 21 36.32824070092304 38.0 35.0 40.0 30.0 41.0 22 36.310519949284064 38.0 35.0 40.0 30.0 41.0 23 36.217069323796814 38.0 35.0 40.0 30.0 41.0 24 36.12835458981964 38.0 34.0 40.0 30.0 41.0 25 36.01281700925816 38.0 34.0 40.0 29.0 41.0 26 35.804041737991724 38.0 34.0 40.0 29.0 41.0 27 35.685496020131005 38.0 34.0 40.0 28.0 41.0 28 35.55402301082846 38.0 34.0 40.0 27.0 41.0 29 35.39937687098233 38.0 34.0 40.0 27.0 41.0 30 35.29000260793089 38.0 34.0 40.0 27.0 41.0 31 35.17731571777749 38.0 34.0 40.0 27.0 40.0 32 35.03396205738003 38.0 33.0 40.0 26.0 40.0 33 34.960378871320806 38.0 33.0 40.0 26.0 40.0 34 34.867162682173685 37.0 33.0 40.0 26.0 40.0 35 34.8644299035343 37.0 33.0 39.0 26.0 40.0 36 34.753262687999914 37.0 33.0 39.0 26.0 40.0 37 34.707918676946726 37.0 33.0 39.0 26.0 40.0 38 34.65631909976445 37.0 33.0 39.0 25.0 40.0 39 34.57593517904555 37.0 33.0 39.0 25.0 40.0 40 34.4963260080069 37.0 33.0 39.0 25.0 40.0 41 34.434675492940556 37.0 33.0 39.0 25.0 40.0 42 34.382991990322914 37.0 33.0 39.0 25.0 40.0 43 33.170556599036175 36.0 31.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 4.0 12 3.0 13 5.0 14 3.0 15 16.0 16 70.0 17 125.0 18 255.0 19 497.0 20 917.0 21 1665.0 22 2709.0 23 4316.0 24 6697.0 25 9852.0 26 14336.0 27 20085.0 28 27683.0 29 37118.0 30 49478.0 31 64633.0 32 83002.0 33 108050.0 34 139250.0 35 175997.0 36 210840.0 37 225401.0 38 190595.0 39 68147.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.56053035326366 17.77277153693135 12.296394119393296 27.370303990411692 2 19.444552337566133 20.325908128698615 34.116105637847184 26.113433895888072 3 20.807404304195718 21.857651364031085 28.90197786588022 28.432966465892978 4 16.343819619963433 14.98075957374202 32.64553780251305 36.0298830037815 5 16.35131048526935 35.183415224212695 32.85202211747341 15.613252173044536 6 37.33329356701134 33.010509406584745 14.365052061513875 15.291144964890035 7 31.1311345331665 29.524760084230618 19.97529401646326 19.368811366139624 8 28.201859399232603 34.365731788180526 18.666681463437644 18.765727349149234 9 28.671356318267442 13.850679310507463 17.164416170281243 40.31354820094385 10 16.991918188653283 26.185360074797675 32.29450753109403 24.528214205455015 11 38.42820837922644 20.479054708286284 19.889703944356743 21.20303296813053 12 22.773201568087803 23.287158159910554 29.06178299240648 24.877857279595162 13 32.32863258415432 18.643723348472278 22.76203462999287 26.265609437380526 14 23.62105654493548 18.756155687925002 23.86007063608544 33.762717131054075 15 26.88693509858811 26.00793754282972 20.89112165997575 26.214005698606424 16 26.01105873670718 24.774233642863287 23.096002374881742 26.11870524554779 17 25.88177195031614 24.457675223824282 23.64040794697577 26.020144878883805 18 25.795696359162022 24.588973446269687 24.206106997300513 25.409223197267778 19 27.177552928512178 24.099015367371454 23.81138001159697 24.912051692519398 20 26.144715194526675 23.707756374865095 23.97943896193253 26.1680894686757 21 25.940519755076448 24.320897572127322 24.45150219593329 25.28708047686294 22 26.56864268295051 23.553083878270662 23.460141660586117 26.418131778192706 23 25.87303260745924 23.845713144249096 24.11205502179287 26.169199226498797 24 25.722729782293257 23.69957191091974 24.096726491861315 26.480971814925685 25 26.333443384317455 23.317260340862113 23.784815183706538 26.56448109111389 26 25.89169041086009 23.759984352414694 24.252578106142785 26.09574713058243 27 26.623575695193917 24.099362166691172 23.515144032693467 25.761918105421444 28 26.149847824458504 24.66249490205 23.022411559237487 26.16524571425401 29 26.149847824458504 24.570385002732777 23.767128418400894 25.512638754407817 30 26.82021090947428 24.009402423156207 23.36713008303763 25.803256584331884 31 26.16434403602274 23.856394563296423 24.023205036081002 25.95605636459983 32 25.77329312310821 24.07952524560328 23.892531052411087 26.254650578877424 33 25.87650060065642 23.60115026398364 23.96230707553844 26.560042059821498 34 26.264083520373767 23.805969942209362 24.573298117018414 25.356648420398457 35 26.259575129217428 23.566817131331515 24.12897882859513 26.044628910855927 36 25.901331431948265 23.318023299365496 24.59972422518096 26.18092104350528 37 25.333343506113376 23.158426252431063 25.0687356251682 26.439494616287362 38 25.92082155371644 22.73741187829286 24.90393658843799 26.437829979552713 39 25.026634187754375 23.108279070799775 25.710799885694946 26.154286855750904 40 26.033670052352825 22.263614647693508 25.837659076847956 25.865056223105714 41 25.014218772108453 22.7369957191092 25.958969478885468 26.289816029896873 42 24.634057357833086 22.764254145639068 26.293700182277725 26.307988314250125 43 24.284830442876604 22.32902099939241 26.084510832623554 27.301637725107437 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 26.0 1 27.5 2 29.0 3 72.5 4 116.0 5 116.0 6 151.0 7 186.0 8 187.0 9 188.0 10 255.5 11 323.0 12 323.0 13 507.5 14 692.0 15 987.5 16 1283.0 17 1367.5 18 1452.0 19 1452.0 20 1831.0 21 2210.0 22 2612.5 23 3015.0 24 3960.0 25 4905.0 26 4905.0 27 6469.0 28 8033.0 29 10027.5 30 12022.0 31 15126.5 32 18231.0 33 18231.0 34 22396.5 35 26562.0 36 31843.0 37 37124.0 38 43881.0 39 50638.0 40 50638.0 41 58819.0 42 67000.0 43 76114.0 44 85228.0 45 97176.5 46 109125.0 47 109125.0 48 121248.5 49 133372.0 50 141148.0 51 148924.0 52 150027.5 53 151131.0 54 151131.0 55 144309.0 56 137487.0 57 128171.0 58 118855.0 59 110693.0 60 102531.0 61 102531.0 62 89937.0 63 77343.0 64 65503.0 65 53663.0 66 44603.5 67 35544.0 68 35544.0 69 29114.0 70 22684.0 71 18067.5 72 13451.0 73 10722.5 74 7994.0 75 7994.0 76 6422.5 77 4851.0 78 3859.0 79 2867.0 80 2178.0 81 1489.0 82 1489.0 83 1080.0 84 671.0 85 499.5 86 328.0 87 229.0 88 130.0 89 130.0 90 82.0 91 34.0 92 22.5 93 11.0 94 8.5 95 6.0 96 6.0 97 4.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1441756.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 69.02668288482973 #Duplication Level Percentage of deduplicated Percentage of total 1 85.14777650208399 58.774685669577075 2 8.09006459631142 11.168606468147528 3 2.6225933486223796 5.430867582336622 4 1.2533623838540755 3.46061791240278 5 0.759514238212253 2.6213374233795106 6 0.4964111929728038 2.0559370798688246 7 0.32732078005949683 1.581570738074739 8 0.23647553482618044 1.3058497401973814 9 0.17075559984967512 1.0608023377469162 >10 0.8576776534479855 9.825722820184325 >50 0.027069264312475028 1.263371787944022 >100 0.01047531630228029 1.2440105317822372 >500 5.035891450028999E-4 0.20661990835803024 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 1.3871972788738178E-4 0.0 6 0.0 0.0 0.0 1.3871972788738178E-4 1.3871972788738178E-4 7 0.0 0.0 0.0 1.3871972788738178E-4 1.3871972788738178E-4 8 0.0 0.0 0.0 1.3871972788738178E-4 2.0807959183107266E-4 9 0.0 0.0 0.0 1.3871972788738178E-4 2.7743945577476356E-4 10 0.0 0.0 0.0 2.0807959183107266E-4 2.7743945577476356E-4 11 0.0 0.0 0.0 2.0807959183107266E-4 2.7743945577476356E-4 12 0.0 0.0 0.0 2.0807959183107266E-4 2.7743945577476356E-4 13 0.0 0.0 0.0 2.0807959183107266E-4 2.7743945577476356E-4 14 0.0 0.0 0.0 2.0807959183107266E-4 2.7743945577476356E-4 15 0.0 0.0 0.0 2.0807959183107266E-4 3.467993197184544E-4 16 0.0 0.0 0.0 2.7743945577476356E-4 3.467993197184544E-4 17 0.0 0.0 0.0 4.855190476058362E-4 3.467993197184544E-4 18 0.0 0.0 0.0 5.548789115495271E-4 3.467993197184544E-4 19 0.0 0.0 0.0 5.548789115495271E-4 3.467993197184544E-4 20 0.0 0.0 0.0 7.629585033805998E-4 3.467993197184544E-4 21 0.0 0.0 0.0 0.001179117687042745 3.467993197184544E-4 22 0.0 0.0 0.0 0.0017339965985922721 3.467993197184544E-4 23 0.0 0.0 0.0 0.002080795918310727 4.855190476058362E-4 24 0.0 0.0 0.0 0.003190553741409781 4.855190476058362E-4 25 0.0 0.0 0.0 0.0035373530611282353 4.855190476058362E-4 26 0.0 0.0 0.0 0.00471647074817098 4.855190476058362E-4 27 0.0 0.0 0.0 0.012276695918033287 4.855190476058362E-4 28 0.0 0.0 0.0 0.03814792516902999 4.855190476058362E-4 29 0.0 0.0 0.0 0.07948640407946976 4.855190476058362E-4 30 0.0 0.0 0.0 0.13684701156090212 4.855190476058362E-4 31 0.0 0.0 0.0 0.40284208978495667 4.855190476058362E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAC 35 8.870496E-4 26.42857 3 TATACTG 155 0.0 20.290323 5 CTTATAC 660 0.0 19.621214 37 GTATTAG 165 3.6379788E-12 17.939396 1 TCTTATA 1225 0.0 16.763266 37 CGTTACA 135 2.2204404E-8 16.444445 24 TAGTACT 135 2.2204404E-8 16.444445 4 TACTTAC 240 0.0 16.1875 31 TTATACT 150 4.6729838E-9 16.033333 4 GTGCGTT 70 0.0025929231 15.857142 11 GTACTTA 280 0.0 15.196428 30 GGGTATA 110 1.4522986E-5 15.136364 1 TCGTTAC 445 0.0 14.966293 23 TAGACTC 100 1.0936698E-4 14.8 5 GTATATA 100 1.0936698E-4 14.8 1 TTACGGG 150 8.104689E-8 14.8 26 CTCGTTA 460 0.0 14.478261 22 TTAGACT 115 2.2105049E-5 14.478261 4 CGGTAGG 90 8.275815E-4 14.388888 1 CTAGGGT 180 3.3305696E-9 14.388888 4 >>END_MODULE