##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727552.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1781825 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54546546378011 34.0 31.0 34.0 31.0 34.0 2 32.72991960489947 34.0 31.0 34.0 31.0 34.0 3 32.822301853436784 34.0 31.0 34.0 31.0 34.0 4 36.29819258344675 37.0 37.0 37.0 35.0 37.0 5 36.139182579658495 37.0 35.0 37.0 35.0 37.0 6 36.161186985253885 37.0 36.0 37.0 35.0 37.0 7 36.1348201983921 37.0 35.0 37.0 35.0 37.0 8 36.12204733910457 37.0 35.0 37.0 35.0 37.0 9 37.832677732100514 39.0 38.0 39.0 35.0 39.0 10 37.806730739550744 39.0 37.0 39.0 35.0 39.0 11 37.87911663603328 39.0 38.0 39.0 35.0 39.0 12 37.86154588694176 39.0 38.0 39.0 35.0 39.0 13 37.88795701036858 39.0 38.0 39.0 35.0 39.0 14 39.23359701429714 40.0 39.0 41.0 36.0 41.0 15 39.24055055911776 40.0 39.0 41.0 36.0 41.0 16 39.218857631922326 40.0 39.0 41.0 36.0 41.0 17 39.23391073758646 40.0 39.0 41.0 36.0 41.0 18 39.21333576529682 40.0 39.0 41.0 36.0 41.0 19 39.24957894293772 40.0 39.0 41.0 36.0 41.0 20 39.235172926634206 40.0 39.0 41.0 36.0 41.0 21 39.21014633872574 40.0 39.0 41.0 36.0 41.0 22 39.18740560941731 40.0 39.0 41.0 36.0 41.0 23 39.14463541593591 40.0 39.0 41.0 36.0 41.0 24 39.107394946192805 40.0 39.0 41.0 36.0 41.0 25 39.05044771512354 40.0 39.0 41.0 36.0 41.0 26 38.95424522610245 40.0 38.0 41.0 36.0 41.0 27 38.91113549310398 40.0 38.0 41.0 35.0 41.0 28 38.84436574860045 40.0 38.0 41.0 35.0 41.0 29 38.763557588427595 40.0 38.0 41.0 35.0 41.0 30 38.70582969708024 40.0 38.0 41.0 35.0 41.0 31 38.649152975179945 40.0 38.0 41.0 35.0 41.0 32 38.56869950752739 40.0 38.0 41.0 35.0 41.0 33 38.52349136419121 40.0 38.0 41.0 35.0 41.0 34 38.481569177668966 40.0 38.0 41.0 34.0 41.0 35 38.47455502083538 40.0 38.0 41.0 34.0 41.0 36 38.41455979122529 40.0 38.0 41.0 34.0 41.0 37 38.40320682446368 40.0 38.0 41.0 34.0 41.0 38 38.37196020933593 40.0 38.0 41.0 34.0 41.0 39 38.33320836782512 40.0 38.0 41.0 34.0 41.0 40 38.27338992325284 40.0 38.0 41.0 34.0 41.0 41 38.23002539531099 40.0 38.0 41.0 34.0 41.0 42 38.19164508299075 40.0 38.0 41.0 34.0 41.0 43 37.11265247709511 39.0 36.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 2.0 14 1.0 15 2.0 16 4.0 17 5.0 18 22.0 19 29.0 20 74.0 21 164.0 22 307.0 23 591.0 24 1040.0 25 1654.0 26 2635.0 27 3941.0 28 6046.0 29 8779.0 30 12419.0 31 17706.0 32 24506.0 33 34864.0 34 50777.0 35 75477.0 36 118086.0 37 207709.0 38 499024.0 39 715959.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.790215088462666 16.205912477375726 12.004938756611901 27.998933677549704 2 18.448837568223592 19.224951945336944 35.1443604169882 27.181850069451265 3 20.579967168492978 21.124465084955034 28.852384493426687 29.443183253125305 4 15.834214920095969 13.963492486635893 32.3419527731399 37.86033982012824 5 16.915353640228417 34.40253672498702 32.6605025746075 16.021607060177065 6 38.34955733587754 31.58071078809647 14.227098620796093 15.84263325522989 7 31.24319167146044 29.135689531800264 19.973734794382164 19.647384002357136 8 28.380508748053263 34.110925595947975 18.952197886997883 18.556367769000882 9 28.88768537875493 13.97780365636356 17.029786875815525 40.10472408906598 10 17.370112104162867 25.538085951201715 32.06689770319757 25.024904241437852 11 38.15554277215776 20.2365552172632 19.60433824870568 22.00356376187336 12 22.977172281228516 22.76660165841202 28.794803081110658 25.461422979248805 13 32.880108877134404 18.0594615071626 22.714239613879027 26.34619000182397 14 23.944775721521474 18.489526188037544 23.86738316052362 33.69831492991736 15 28.028285606049973 25.224306539643344 20.763823607817827 25.98358424648885 16 26.36572053933467 24.16802996927308 23.436869501774865 26.029379989617386 17 26.081405300745025 24.093050664346947 23.73622549913712 26.08931853577091 18 25.958890463429352 24.094958820310637 24.482707336579068 25.463443379680946 19 27.24650288327978 24.132841328413285 23.833990431159062 24.786665357147868 20 26.078150211159905 23.180110280190256 23.945842043971773 26.79589746467807 21 25.61867747955046 24.5529723738302 24.430962636622564 25.397387509996772 22 26.694652954134103 23.369971798577303 22.898994008951494 27.0363812383371 23 25.964053708978152 23.43428787900046 23.92647987316375 26.67517853885763 24 25.49481570861336 23.42177262076803 24.07761704993476 27.005794620683847 25 26.510403659169672 22.78815259635486 23.344043326364822 27.357400418110643 26 25.96130371950107 23.293196582155936 24.290937662228334 26.45456203611466 27 27.113324821461145 23.63290446592679 23.522904886843545 25.73086582576852 28 26.212226228726166 24.492640972037098 22.803249477361696 26.491883321875044 29 26.032747323670957 24.134861728845426 24.228529737768863 25.603861209714758 30 27.061972977144222 23.34847698286869 23.58003732128576 26.009512718701334 31 26.218624163427943 23.384619701710324 24.02738765030236 26.36936848455937 32 25.755784097764934 23.446073548187954 23.896903455726573 26.90123889832054 33 25.98229343510165 23.209237719753624 23.765128449763584 27.043340395381136 34 26.580500329718127 23.555062927055125 24.493987905658525 25.370448837568222 35 26.34742469097695 23.293701682263972 24.17931053835253 26.17956308840655 36 25.81561039945 23.1836459809465 24.668359687399153 26.33238393220434 37 24.93005766559567 22.901800120662806 25.36539783648787 26.802744377253656 38 26.0865124240596 22.207848694456526 24.913782217670086 26.791856663813785 39 24.675206599974743 22.63718378628653 25.98010466796683 26.70750494577189 40 26.101104204958396 21.798493118011027 26.235573078164244 25.86482959886633 41 25.284188963562638 22.08056346723163 26.149986670969373 26.48526089823636 42 24.517727610736184 22.237088378488348 26.946754030277948 26.298429980497524 43 24.2341980834257 21.661105888625425 26.50136797945926 27.60332804848961 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 24.0 1 33.5 2 43.0 3 109.0 4 175.0 5 175.0 6 229.5 7 284.0 8 251.0 9 218.0 10 286.5 11 355.0 12 355.0 13 643.5 14 932.0 15 1271.5 16 1611.0 17 1546.0 18 1481.0 19 1481.0 20 1885.5 21 2290.0 22 2568.0 23 2846.0 24 3769.0 25 4692.0 26 4692.0 27 6169.5 28 7647.0 29 9675.0 30 11703.0 31 15397.5 32 19092.0 33 19092.0 34 24149.0 35 29206.0 36 35287.0 37 41368.0 38 49476.0 39 57584.0 40 57584.0 41 66581.0 42 75578.0 43 86117.0 44 96656.0 45 112204.0 46 127752.0 47 127752.0 48 146464.5 49 165177.0 50 179194.5 51 193212.0 52 200245.5 53 207279.0 54 207279.0 55 194313.5 56 181348.0 57 164217.5 58 147087.0 59 137624.0 60 128161.0 61 128161.0 62 112248.5 63 96336.0 64 81239.0 65 66142.0 66 55135.5 67 44129.0 68 44129.0 69 36218.5 70 28308.0 71 22994.0 72 17680.0 73 14262.5 74 10845.0 75 10845.0 76 8721.5 77 6598.0 78 5304.5 79 4011.0 80 3119.5 81 2228.0 82 2228.0 83 1603.5 84 979.0 85 738.0 86 497.0 87 347.0 88 197.0 89 197.0 90 123.5 91 50.0 92 33.0 93 16.0 94 10.5 95 5.0 96 5.0 97 3.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1781825.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.80397774925967 #Duplication Level Percentage of deduplicated Percentage of total 1 82.76312362206036 51.150902507970464 2 9.099342895055921 11.247511716378405 3 3.055235128689897 5.664770517369208 4 1.4750040879288269 3.6464447932168116 5 0.8817958968402293 2.7249246993851006 6 0.5618009398451832 2.0832919671422925 7 0.41302045278372634 1.7868414811684208 8 0.3016692083640653 1.4915485633095578 9 0.2251207635414363 1.252202279473015 >10 1.1504711409279362 12.017894155943832 >50 0.04487945430677557 1.885446918467312 >100 0.025083483607415292 2.942422778925052 >500 0.002544261298663004 1.0210285236674006 >1k 9.086647495225011E-4 1.0847690975831643 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 3496 0.19620333085460132 No Hit GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG 2895 0.16247386808468844 No Hit CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT 2186 0.12268320401835196 No Hit GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG 2147 0.12049443688353233 No Hit TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG 1873 0.10511694470556872 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.1224446845228909E-4 0.0 3 0.0 0.0 0.0 1.1224446845228909E-4 0.0 4 0.0 0.0 0.0 1.1224446845228909E-4 0.0 5 0.0 5.6122234226144545E-5 0.0 1.1224446845228909E-4 0.0 6 0.0 5.6122234226144545E-5 0.0 1.1224446845228909E-4 1.6836670267843362E-4 7 0.0 5.6122234226144545E-5 0.0 1.1224446845228909E-4 1.6836670267843362E-4 8 0.0 5.6122234226144545E-5 0.0 1.1224446845228909E-4 1.6836670267843362E-4 9 0.0 5.6122234226144545E-5 0.0 2.806111711307227E-4 1.6836670267843362E-4 10 0.0 5.6122234226144545E-5 0.0 3.3673340535686724E-4 1.6836670267843362E-4 11 0.0 5.6122234226144545E-5 0.0 3.928556395830118E-4 1.6836670267843362E-4 12 0.0 5.6122234226144545E-5 0.0 3.928556395830118E-4 1.6836670267843362E-4 13 0.0 5.6122234226144545E-5 0.0 3.928556395830118E-4 1.6836670267843362E-4 14 0.0 5.6122234226144545E-5 0.0 5.612223422614454E-4 2.2448893690457818E-4 15 0.0 5.6122234226144545E-5 0.0 6.1734457648759E-4 2.2448893690457818E-4 16 0.0 5.6122234226144545E-5 0.0 6.1734457648759E-4 3.3673340535686724E-4 17 0.0 5.6122234226144545E-5 0.0 7.857112791660235E-4 3.3673340535686724E-4 18 0.0 5.6122234226144545E-5 0.0 7.857112791660235E-4 3.928556395830118E-4 19 0.0 5.6122234226144545E-5 0.0 8.979557476183127E-4 3.928556395830118E-4 20 0.0 5.6122234226144545E-5 0.0 0.0010663224502967463 3.928556395830118E-4 21 0.0 5.6122234226144545E-5 0.0 0.0016275447925581917 3.928556395830118E-4 22 0.0 5.6122234226144545E-5 0.0 0.0023010116032719263 3.928556395830118E-4 23 0.0 5.6122234226144545E-5 0.0 0.002693867242854938 3.928556395830118E-4 24 0.0 5.6122234226144545E-5 0.0 0.003423456287794817 3.928556395830118E-4 25 0.0 5.6122234226144545E-5 0.0 0.004826512143448431 4.4897787380915636E-4 26 0.0 5.6122234226144545E-5 0.0 0.007408134917851079 5.051001080353008E-4 27 0.0 5.6122234226144545E-5 0.0 0.01655605909671264 5.051001080353008E-4 28 0.0 5.6122234226144545E-5 0.0 0.05045388856930395 5.051001080353008E-4 29 0.0 5.6122234226144545E-5 0.0 0.10158124394932162 5.051001080353008E-4 30 0.0 5.6122234226144545E-5 0.0 0.16494324639063881 5.051001080353008E-4 31 0.0 5.6122234226144545E-5 0.0 0.4646920993924768 5.051001080353008E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACCGT 150 0.0 20.966667 6 CTTATAC 890 0.0 19.331459 37 TAAACCG 50 0.007036365 18.5 5 TCTTATA 1610 0.0 17.35093 37 TCGTTAG 65 0.0015803957 17.076923 23 TACTTAC 500 0.0 17.02 31 CATATAA 220 0.0 16.818182 37 TATACCG 100 5.881444E-6 16.650002 5 TATACTG 140 3.4762706E-8 15.857143 5 ACCGTCG 95 7.0631606E-5 15.578948 8 TTAATAC 150 8.108327E-8 14.8 3 ACATATA 240 0.0 14.645833 36 TACCGTG 165 1.6465492E-8 14.575757 7 GTACTTA 625 0.0 14.504 30 TTATACT 205 9.276846E-11 14.439025 4 TTCGTTA 90 8.277164E-4 14.388889 22 AGGGCGT 735 0.0 14.346939 10 AGTGTAC 730 0.0 14.191781 27 TTTATAC 170 2.438901E-8 14.1470585 3 TAGTATC 80 0.0063004154 13.875 7 >>END_MODULE