##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727542.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1926081 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.282556133412875 33.0 31.0 34.0 30.0 34.0 2 32.46362691911711 34.0 31.0 34.0 31.0 34.0 3 32.55819718900711 34.0 31.0 34.0 31.0 34.0 4 36.10401743228867 37.0 35.0 37.0 35.0 37.0 5 35.902874801215525 37.0 35.0 37.0 35.0 37.0 6 35.91526213072036 37.0 35.0 37.0 35.0 37.0 7 35.89025487505458 37.0 35.0 37.0 35.0 37.0 8 35.87491959060912 37.0 35.0 37.0 35.0 37.0 9 37.547617675476786 39.0 37.0 39.0 35.0 39.0 10 37.47622400096361 39.0 37.0 39.0 35.0 39.0 11 37.57001496821785 39.0 37.0 39.0 35.0 39.0 12 37.53282390512133 39.0 37.0 39.0 35.0 39.0 13 37.57582053921927 39.0 37.0 39.0 35.0 39.0 14 38.850250846148214 40.0 38.0 41.0 36.0 41.0 15 38.85219728557625 40.0 38.0 41.0 36.0 41.0 16 38.831782256301786 40.0 38.0 41.0 36.0 41.0 17 38.84765490132554 40.0 38.0 41.0 36.0 41.0 18 38.81411996691728 40.0 38.0 41.0 35.0 41.0 19 38.86153645667031 40.0 38.0 41.0 35.0 41.0 20 38.83404488180923 40.0 38.0 41.0 35.0 41.0 21 38.8123687425399 40.0 38.0 41.0 35.0 41.0 22 38.78612737470542 40.0 38.0 41.0 35.0 41.0 23 38.74191012735186 40.0 38.0 41.0 35.0 41.0 24 38.693011353105085 40.0 38.0 41.0 35.0 41.0 25 38.63333940784422 40.0 38.0 41.0 35.0 41.0 26 38.516203627988645 40.0 38.0 41.0 34.0 41.0 27 38.469649511105715 40.0 38.0 41.0 34.0 41.0 28 38.38935070747284 40.0 38.0 41.0 34.0 41.0 29 38.298757944240144 40.0 38.0 41.0 34.0 41.0 30 38.24205627904538 40.0 38.0 41.0 34.0 41.0 31 38.16474021601376 40.0 38.0 41.0 34.0 41.0 32 38.06930341974195 40.0 38.0 41.0 34.0 41.0 33 38.02579694208084 40.0 38.0 41.0 33.0 41.0 34 37.97114503491805 40.0 38.0 41.0 33.0 41.0 35 37.95998195299159 40.0 38.0 41.0 33.0 41.0 36 37.89534708041874 40.0 37.0 41.0 33.0 41.0 37 37.8806057481487 40.0 37.0 41.0 33.0 41.0 38 37.8438082302873 40.0 37.0 41.0 33.0 41.0 39 37.78468247181713 40.0 37.0 41.0 33.0 41.0 40 37.73103571448968 40.0 37.0 41.0 33.0 41.0 41 37.68206581135477 40.0 37.0 41.0 33.0 41.0 42 37.63642339029356 40.0 37.0 41.0 33.0 41.0 43 36.54839697811255 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 3.0 13 3.0 14 2.0 15 6.0 16 11.0 17 9.0 18 36.0 19 67.0 20 174.0 21 305.0 22 559.0 23 1051.0 24 1905.0 25 2980.0 26 4706.0 27 7098.0 28 10281.0 29 14537.0 30 20224.0 31 27660.0 32 36771.0 33 49568.0 34 69636.0 35 98517.0 36 150007.0 37 260292.0 38 576727.0 39 592942.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.27850178678882 16.8888535840393 12.174721623856941 27.657923005314938 2 18.227841923574346 19.769936986035376 35.680067453030276 26.322153637360007 3 19.93239121303829 21.67343948670902 29.507741367055694 28.886427933196995 4 15.40667292808558 14.547415191780615 33.44324563712534 36.60266624300847 5 16.093559928165018 35.32219049977649 33.22456324526331 15.359686326795185 6 36.949121039042495 32.985736321577335 14.770406852048279 15.294735787331891 7 30.693101691984914 30.054239671124943 20.263893366893708 18.98876526999643 8 28.030337249575695 34.85762021431082 18.984611758280156 18.127430777833332 9 28.9149833262464 14.060364024150592 17.512970638306488 39.511682011296514 10 16.887711368317323 26.355174055504417 32.410423029976414 24.34669154620185 11 37.81009209893042 20.77711165833628 20.31726599244788 21.095530250285425 12 22.539862030724564 23.176751133519307 29.473630652085763 24.809756183670366 13 31.92259307889959 18.79116195009452 23.36324380958018 25.923001161425713 14 23.38328450361122 18.885290909364663 24.47622919285326 33.255195394170855 15 26.886927392980876 26.072683339901076 21.36909091569877 25.67129835141928 16 25.54658916213804 25.063068479466853 23.706791147412805 25.6835512109823 17 25.367572807166468 24.64922295583623 24.12816491102918 25.85503932596812 18 25.256310612066677 25.115973834952943 24.74766118351201 24.880054369468365 19 26.896013199860235 24.388538176743346 24.407696249534677 24.307752373861742 20 25.540981921321066 23.93237875250314 24.494971914472963 26.03166741170283 21 25.274534144721848 24.753995288879334 25.288759922350096 24.68271064404872 22 26.259227934858398 23.592154224043536 23.851281436242814 26.297336404855248 23 25.356098731050253 24.05994348108932 24.85404300234518 25.729914785515252 24 24.934932643019685 23.708712146581583 24.91525538126382 26.441099829134913 25 25.809869886053598 23.46313576635666 24.32057634128575 26.406418006303994 26 25.284554491737367 23.893699174645302 25.02745211649977 25.794294217117557 27 26.232437784288408 24.406605952709153 24.12494593944907 25.23601032355337 28 25.494722184581022 25.05984950788674 23.452596230376603 25.99283207715563 29 25.448618204530337 24.94619904355009 24.594604276767175 25.010578475152396 30 26.78651624723986 24.081385985324605 23.679741402360545 25.45235636507499 31 25.709095308037412 24.10568402886483 24.663396814568028 25.521823848529735 32 25.301531970877654 24.41029219435735 24.42316808067781 25.865007754087184 33 25.327439500207937 23.68623126441723 24.486041864282967 26.50028737109187 34 25.706499363214736 24.01145123180178 25.376814370735186 24.9052350342483 35 25.649232820426555 23.779737196929933 24.692211802099703 25.87881818054381 36 25.20854522732948 23.606795352843417 25.381590909208906 25.803068510618193 37 24.61127024252874 23.520973417005827 25.96853403361541 25.89922230685002 38 25.61610856448924 22.811605534762037 25.38434261072094 26.187943290027782 39 24.17837048389969 23.432867049724283 26.692958395830708 25.695804070545318 40 25.60193470575744 22.485606783930688 26.481233136093447 25.431225374218425 41 24.42643897115438 23.086775685965442 26.587978387201783 25.898806955678396 42 24.074480772096294 23.12057488755665 27.022851063896063 25.78209327645099 43 23.59028514377121 22.69826658380411 26.583461443210332 27.127986829214347 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 47.0 1 77.0 2 107.0 3 211.0 4 315.0 5 315.0 6 426.0 7 537.0 8 507.5 9 478.0 10 649.0 11 820.0 12 820.0 13 1440.0 14 2060.0 15 3003.5 16 3947.0 17 3784.0 18 3621.0 19 3621.0 20 4346.0 21 5071.0 22 5387.5 23 5704.0 24 7388.0 25 9072.0 26 9072.0 27 11489.5 28 13907.0 29 16999.0 30 20091.0 31 24538.5 32 28986.0 33 28986.0 34 34919.0 35 40852.0 36 47798.0 37 54744.0 38 63898.0 39 73052.0 40 73052.0 41 83252.0 42 93452.0 43 104601.5 44 115751.0 45 131691.0 46 147631.0 47 147631.0 48 163053.0 49 178475.0 50 189102.5 51 199730.0 52 200166.0 53 200602.0 54 200602.0 55 188581.0 56 176560.0 57 162487.0 58 148414.0 59 138548.5 60 128683.0 61 128683.0 62 112476.5 63 96270.0 64 80799.0 65 65328.0 66 54212.0 67 43096.0 68 43096.0 69 35307.5 70 27519.0 71 22325.5 72 17132.0 73 13758.5 74 10385.0 75 10385.0 76 8361.0 77 6337.0 78 5006.5 79 3676.0 80 2859.5 81 2043.0 82 2043.0 83 1468.0 84 893.0 85 674.0 86 455.0 87 312.5 88 170.0 89 170.0 90 103.0 91 36.0 92 29.0 93 22.0 94 16.0 95 10.0 96 10.0 97 5.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1926081.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.21743535472828 #Duplication Level Percentage of deduplicated Percentage of total 1 82.66647784771767 52.259627193411696 2 9.146490358845648 11.564353259659404 3 3.158011603997437 5.989241832755692 4 1.4942412212759455 3.7784839124152922 5 0.8448920210319579 2.6705953360656762 6 0.5814973225490144 2.2056461638313936 7 0.3997457561696906 1.7689631049289074 8 0.2936439328541607 1.485073307401286 9 0.21875440072015936 1.24461829674801 >10 1.1353918854000802 12.111288067768058 >50 0.038935434359535656 1.640383049521849 >100 0.020270914592456248 2.3725486886187483 >500 0.001153110340455949 0.49278154601538365 >1k 4.941901459096892E-4 0.41639624085851695 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 5.19188964534721E-5 0.0 4 0.0 0.0 0.0 5.19188964534721E-5 0.0 5 0.0 0.0 0.0 5.19188964534721E-5 0.0 6 0.0 0.0 0.0 5.19188964534721E-5 5.19188964534721E-5 7 0.0 0.0 0.0 1.038377929069442E-4 5.19188964534721E-5 8 0.0 0.0 0.0 1.038377929069442E-4 5.19188964534721E-5 9 0.0 0.0 0.0 1.557566893604163E-4 1.038377929069442E-4 10 0.0 0.0 0.0 1.557566893604163E-4 1.038377929069442E-4 11 0.0 0.0 0.0 2.076755858138884E-4 1.038377929069442E-4 12 0.0 0.0 0.0 2.076755858138884E-4 1.038377929069442E-4 13 0.0 0.0 0.0 2.076755858138884E-4 1.038377929069442E-4 14 0.0 0.0 0.0 2.595944822673605E-4 1.557566893604163E-4 15 0.0 0.0 0.0 2.595944822673605E-4 2.076755858138884E-4 16 0.0 0.0 0.0 2.595944822673605E-4 2.076755858138884E-4 17 0.0 0.0 0.0 3.6343227517430474E-4 2.076755858138884E-4 18 0.0 0.0 0.0 5.19188964534721E-4 2.595944822673605E-4 19 0.0 0.0 0.0 6.230267574416652E-4 2.595944822673605E-4 20 0.0 5.19188964534721E-5 0.0 9.345401361624978E-4 2.595944822673605E-4 21 0.0 5.19188964534721E-5 0.0 0.0012460535148833304 2.595944822673605E-4 22 0.0 5.19188964534721E-5 0.0 0.001609485790057635 2.595944822673605E-4 23 0.0 5.19188964534721E-5 0.0 0.0019209991687784678 3.115133787208326E-4 24 0.0 5.19188964534721E-5 0.0 0.0028555393049409655 3.115133787208326E-4 25 0.0 5.19188964534721E-5 0.0 0.0040496739233708235 3.115133787208326E-4 26 0.0 5.19188964534721E-5 0.0 0.0062302675744166525 3.115133787208326E-4 27 0.0 5.19188964534721E-5 0.0 0.01682172245092496 3.6343227517430474E-4 28 0.0 5.19188964534721E-5 0.0 0.05337262555416932 3.6343227517430474E-4 29 0.0 5.19188964534721E-5 0.0 0.1073682778657803 3.6343227517430474E-4 30 0.0 5.19188964534721E-5 0.0 0.17688768021697945 3.6343227517430474E-4 31 0.0 5.19188964534721E-5 0.0 0.5240693408013474 3.6343227517430474E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 1190 0.0 21.142857 37 TACTTAC 585 0.0 18.34188 31 GTACTTA 615 0.0 17.747967 30 TATACCG 65 0.0015804581 17.076923 5 GTATAGA 190 1.8189894E-12 16.552631 1 TCTTATA 2010 0.0 16.383085 37 CGATAGC 85 5.36649E-4 15.235293 4 AGTGTAC 785 0.0 15.082803 27 CTATGCG 75 0.0041057444 14.8 9 CTATACC 155 1.2113378E-7 14.32258 4 CTACAGT 1005 0.0 14.17413 23 TAAAACG 80 0.006300658 13.875001 4 TAAAGTG 260 1.8189894E-12 13.519231 5 GTGTACT 865 0.0 13.260117 28 TATACAG 335 0.0 13.253732 5 CAGTGTA 925 0.0 13.2 26 TCGTTAC 730 0.0 13.178082 23 ACTAGAC 225 4.0745363E-10 13.155556 3 CGAACGT 85 0.0094077485 13.058823 10 CTTAGCG 85 0.0094077485 13.058823 3 >>END_MODULE