##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727532.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1340962 Sequences flagged as poor quality 0 Sequence length 43 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.579892644236004 34.0 31.0 34.0 31.0 34.0 2 32.75242102311624 34.0 31.0 34.0 31.0 34.0 3 32.844298347007594 34.0 31.0 34.0 31.0 34.0 4 36.30428453602712 37.0 37.0 37.0 35.0 37.0 5 36.15979200007159 37.0 35.0 37.0 35.0 37.0 6 36.182163998681546 37.0 36.0 37.0 35.0 37.0 7 36.15640562521533 37.0 35.0 37.0 35.0 37.0 8 36.143102489108564 37.0 35.0 37.0 35.0 37.0 9 37.86997170687909 39.0 38.0 39.0 35.0 39.0 10 37.83436741682464 39.0 37.0 39.0 35.0 39.0 11 37.92064428373064 39.0 38.0 39.0 35.0 39.0 12 37.88436957945117 39.0 38.0 39.0 35.0 39.0 13 37.918026014159985 39.0 38.0 39.0 35.0 39.0 14 39.26794122428525 40.0 39.0 41.0 36.0 41.0 15 39.287433946674106 40.0 39.0 41.0 36.0 41.0 16 39.26609329720007 40.0 39.0 41.0 36.0 41.0 17 39.27430009202349 40.0 39.0 41.0 36.0 41.0 18 39.24883628320564 40.0 39.0 41.0 36.0 41.0 19 39.28922296082961 40.0 39.0 41.0 36.0 41.0 20 39.259612129202765 40.0 39.0 41.0 36.0 41.0 21 39.24098222022697 40.0 39.0 41.0 36.0 41.0 22 39.21534987568626 40.0 39.0 41.0 36.0 41.0 23 39.17457765395291 40.0 39.0 41.0 36.0 41.0 24 39.13536998065568 40.0 39.0 41.0 36.0 41.0 25 39.07053592868404 40.0 39.0 41.0 36.0 41.0 26 38.975730855907926 40.0 38.0 41.0 36.0 41.0 27 38.93118969814208 40.0 38.0 41.0 35.0 41.0 28 38.85441123611258 40.0 38.0 41.0 35.0 41.0 29 38.77365801566338 40.0 38.0 41.0 35.0 41.0 30 38.7188980746658 40.0 38.0 41.0 35.0 41.0 31 38.660461668563315 40.0 38.0 41.0 35.0 41.0 32 38.57157324368625 40.0 38.0 41.0 35.0 41.0 33 38.52660478074696 40.0 38.0 41.0 35.0 41.0 34 38.48421804644725 40.0 38.0 41.0 34.0 41.0 35 38.46862923781584 40.0 38.0 41.0 34.0 41.0 36 38.40221199407589 40.0 38.0 41.0 34.0 41.0 37 38.392026023108784 40.0 38.0 41.0 34.0 41.0 38 38.35516368099916 40.0 38.0 41.0 34.0 41.0 39 38.313797109836074 40.0 38.0 41.0 34.0 41.0 40 38.25992086278358 40.0 38.0 41.0 34.0 41.0 41 38.21151829805766 40.0 38.0 41.0 34.0 41.0 42 38.171512690143345 40.0 38.0 41.0 34.0 41.0 43 37.04897827082348 39.0 36.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 2.0 12 0.0 13 0.0 14 0.0 15 2.0 16 1.0 17 6.0 18 10.0 19 27.0 20 69.0 21 143.0 22 251.0 23 470.0 24 781.0 25 1342.0 26 2245.0 27 3274.0 28 4859.0 29 7058.0 30 10029.0 31 13865.0 32 19070.0 33 26158.0 34 38129.0 35 56342.0 36 85477.0 37 148950.0 38 351880.0 39 570521.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.96038068192835 16.197550713592182 11.567963894577177 28.274104709902293 2 19.062285135596685 19.113666159070878 34.061069590338874 27.762979114993563 3 20.585370800962295 20.688729434540278 28.721097242129158 30.00480252236827 4 15.93594747651313 13.905614029331181 32.041250982503605 38.117187511652084 5 16.951188773432804 34.25719744481947 32.73634897931485 16.05526480243288 6 38.7761920173726 31.500519776101036 14.058638499823262 15.664649706703099 7 31.65652717974111 28.67821757812675 19.74299047996886 19.922264762163284 8 28.813195303073464 33.44330413538937 18.60582179062494 19.137678770912224 9 28.814612196318762 13.38665823490897 16.808007982329105 40.990721586443165 10 17.401462532122462 25.420183420559272 31.983158359446428 25.19519568787184 11 38.99484101712055 19.733370520566577 19.481909256190704 21.789879206122173 12 23.251069008666914 22.553510092008572 28.588953303673037 25.606467595651477 13 33.19266317762919 17.83175063872056 22.365137863712768 26.61044831993748 14 24.219403681834383 18.172625324207548 23.276871380397058 34.33109961356101 15 27.786618860191414 25.169393316141697 20.39707314599519 26.646914677671703 16 26.696729661243197 24.022157227423296 22.67961359084001 26.601499520493498 17 26.40097183961962 23.663310369719646 23.243760822454327 26.69195696820641 18 26.39918207973082 23.82051094661892 23.790532468481583 25.98977450516868 19 27.739786809767914 23.508943579310973 23.353980202272698 25.397289408648415 20 26.68621482189652 22.90750968334673 23.39514467971501 27.01113081504174 21 26.28329512693126 23.784268308870796 23.94892621864005 25.983510345557892 22 27.238206600932763 22.860826779580627 22.753217466266754 27.147749153219852 23 26.502988153281002 23.126382403080772 23.555328189762275 26.81530125387595 24 26.129375776494783 22.982828745333574 23.574791828552936 27.313003649618707 25 26.95743801837785 22.475357243531136 23.16530968066209 27.40189505742892 26 26.456528969500997 22.99975689094844 23.694258301130084 26.84945583842048 27 27.259310852954822 23.401035972682298 23.020861142970496 26.31879203139239 28 26.514696165886882 23.944302672260662 22.57953618372482 26.96146497812764 29 26.46778954213468 23.89113188889767 23.556073923049272 26.08500464591838 30 27.37825531223107 23.083428165749666 22.974998545820092 26.563317976199173 31 26.586584854753525 23.112437190613903 23.62460681212443 26.67637114250814 32 26.13355188290198 23.245699729000524 23.513045112389463 27.107703275708033 33 26.247798222470138 22.919292269281307 23.51476029894956 27.318149209298998 34 26.736178952125417 23.196555905387324 24.190469230298845 25.876795912188417 35 26.61715991952046 22.967392066292707 23.72475879256832 26.69068922161851 36 26.130718096411382 22.78849065074178 24.226189854746067 26.85460139810077 37 25.51011885497128 22.37252062325405 24.925911397936705 27.191449123837963 38 26.109166404417127 21.829925083633988 24.724787130433228 27.33612138151566 39 24.994369713683163 22.09659930706463 25.926760042417307 26.9822709368349 40 26.172330013825896 21.221183001457163 26.114759404069616 26.49172758064733 41 25.236061871999354 21.50911062356726 26.286278060079255 26.968549444354128 42 24.471461532839854 21.612096390501744 26.93879468620289 26.977647390455513 43 23.993968509174756 21.143030152979726 26.713434086871963 28.149567250973558 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 8.0 1 13.5 2 19.0 3 46.5 4 74.0 5 74.0 6 90.5 7 107.0 8 104.0 9 101.0 10 146.0 11 191.0 12 191.0 13 326.5 14 462.0 15 600.5 16 739.0 17 740.0 18 741.0 19 741.0 20 937.5 21 1134.0 22 1316.5 23 1499.0 24 2111.5 25 2724.0 26 2724.0 27 3619.0 28 4514.0 29 5864.5 30 7215.0 31 9694.0 32 12173.0 33 12173.0 34 15361.5 35 18550.0 36 22958.0 37 27366.0 38 33435.0 39 39504.0 40 39504.0 41 46418.0 42 53332.0 43 62117.0 44 70902.0 45 82659.0 46 94416.0 47 94416.0 48 107277.0 49 120138.0 50 130778.0 51 141418.0 52 144963.5 53 148509.0 54 148509.0 55 142886.5 56 137264.0 57 128063.0 58 118862.0 59 112166.5 60 105471.0 61 105471.0 62 93107.0 63 80743.0 64 68194.5 65 55646.0 66 46460.0 67 37274.0 68 37274.0 69 30592.5 70 23911.0 71 19511.5 72 15112.0 73 12034.0 74 8956.0 75 8956.0 76 7263.5 77 5571.0 78 4386.5 79 3202.0 80 2496.5 81 1791.0 82 1791.0 83 1277.0 84 763.0 85 565.5 86 368.0 87 250.5 88 133.0 89 133.0 90 88.0 91 43.0 92 25.5 93 8.0 94 7.0 95 6.0 96 6.0 97 4.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1340962.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.12764444868506 #Duplication Level Percentage of deduplicated Percentage of total 1 84.26090789464031 57.40497173969455 2 8.735390200124195 11.90243115349178 3 2.8009823933432343 5.724729978021443 4 1.311869160274816 3.5749822285759083 5 0.7626803293675248 2.597980715357837 6 0.4800658108539783 1.9623451724297718 7 0.34821462590431373 1.6606129557808675 8 0.23016279204852255 1.2544359089598707 9 0.18919996280978124 1.1600773016408292 >10 0.8369869463593733 9.385481447152879 >50 0.029071115479459574 1.323685796839116 >100 0.01359189374341557 1.6327778545333331 >500 7.67265669708161E-4 0.3393946463849705 >1k 1.0960938138688014E-4 0.07609310113669636 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.457332869984384E-5 2 0.0 0.0 0.0 7.457332869984384E-5 7.457332869984384E-5 3 0.0 0.0 0.0 7.457332869984384E-5 7.457332869984384E-5 4 0.0 0.0 0.0 1.4914665739968768E-4 2.2371998609953153E-4 5 0.0 0.0 0.0 2.9829331479937535E-4 2.2371998609953153E-4 6 0.0 0.0 0.0 2.9829331479937535E-4 2.2371998609953153E-4 7 0.0 0.0 0.0 2.9829331479937535E-4 2.2371998609953153E-4 8 0.0 0.0 0.0 2.9829331479937535E-4 2.9829331479937535E-4 9 0.0 0.0 0.0 4.4743997219906306E-4 3.728666434992192E-4 10 0.0 0.0 0.0 4.4743997219906306E-4 3.728666434992192E-4 11 0.0 0.0 0.0 5.220133008989069E-4 3.728666434992192E-4 12 0.0 0.0 0.0 5.220133008989069E-4 3.728666434992192E-4 13 0.0 0.0 0.0 5.220133008989069E-4 3.728666434992192E-4 14 0.0 0.0 0.0 5.220133008989069E-4 3.728666434992192E-4 15 0.0 0.0 0.0 5.965866295987507E-4 5.220133008989069E-4 16 0.0 0.0 0.0 5.965866295987507E-4 5.220133008989069E-4 17 0.0 0.0 0.0 7.457332869984384E-4 5.220133008989069E-4 18 0.0 0.0 0.0 9.694532730979699E-4 5.965866295987507E-4 19 0.0 0.0 0.0 0.0011185999304976577 5.965866295987507E-4 20 0.0 0.0 0.0 0.0011931732591975014 5.965866295987507E-4 21 0.0 0.0 0.0 0.0014914665739968768 5.965866295987507E-4 22 0.0 0.0 0.0 0.0023117731896951594 5.965866295987507E-4 23 7.457332869984384E-5 0.0 0.0 0.0029829331479937536 5.965866295987507E-4 24 7.457332869984384E-5 0.0 0.0 0.004101533078491411 6.711599582985946E-4 25 7.457332869984384E-5 0.0 0.0 0.005369279666388757 6.711599582985946E-4 26 7.457332869984384E-5 0.0 0.0 0.0075319061986842285 7.457332869984384E-4 27 7.457332869984384E-5 0.0 0.0 0.020731385378556587 7.457332869984384E-4 28 7.457332869984384E-5 0.0 0.0 0.06032982291817367 7.457332869984384E-4 29 7.457332869984384E-5 0.0 0.0 0.11998848587804875 7.457332869984384E-4 30 7.457332869984384E-5 0.0 0.0 0.19582956116578992 7.457332869984384E-4 31 7.457332869984384E-5 0.0 0.0 0.49658379581226014 7.457332869984384E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 740 0.0 19.25 37 GTACTAG 80 1.6169985E-5 18.5 1 TAGATCG 50 0.0070354785 18.5 5 TAGTACC 105 4.7987305E-7 17.61905 4 TATAGTA 105 9.34534E-6 15.857144 2 TCTTATA 1250 0.0 15.54 37 TTAGAGT 120 1.9359886E-6 15.416666 4 CTATACC 120 1.9359886E-6 15.416666 4 ATAGTAC 145 5.3469194E-8 15.310345 3 CTTACAC 230 1.8189894E-12 14.478261 3 TACTTAC 270 0.0 14.388889 31 GTTCTAG 180 3.3305696E-9 14.388888 1 TGTTACG 260 0.0 14.230769 24 ATAGGAC 145 8.912375E-7 14.034483 3 GTGTTAG 120 3.301166E-5 13.874999 1 TCTATAC 135 6.568449E-6 13.703704 3 GTTACGG 500 0.0 13.69 25 GTTTAAG 110 2.456838E-4 13.454545 1 TTACACA 220 2.8376235E-10 13.454545 4 TAGAGTG 140 9.560879E-6 13.214285 5 >>END_MODULE