##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727501.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1599066 Sequences flagged as poor quality 0 Sequence length 43 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.310402447428686 31.0 31.0 34.0 30.0 34.0 2 31.485471518999216 31.0 31.0 34.0 30.0 34.0 3 31.584408023183535 31.0 31.0 34.0 30.0 34.0 4 35.411790382635864 37.0 35.0 37.0 33.0 37.0 5 34.532947358020245 35.0 35.0 37.0 30.0 37.0 6 34.49171641445694 35.0 35.0 37.0 30.0 37.0 7 34.48206077797914 35.0 35.0 37.0 30.0 37.0 8 34.404344786268986 35.0 35.0 37.0 30.0 37.0 9 35.99830963825133 37.0 35.0 39.0 32.0 39.0 10 35.722397949803195 37.0 35.0 39.0 30.0 39.0 11 35.89237967663624 37.0 35.0 39.0 31.0 39.0 12 35.837330041411676 37.0 35.0 39.0 30.0 39.0 13 35.9529788013753 37.0 35.0 39.0 31.0 39.0 14 36.92472230664651 38.0 36.0 40.0 32.0 41.0 15 36.87213348292065 38.0 36.0 40.0 31.0 41.0 16 36.836501432711344 38.0 36.0 40.0 31.0 41.0 17 36.84058068897719 38.0 36.0 40.0 31.0 41.0 18 36.788275155622095 38.0 36.0 40.0 31.0 41.0 19 36.862334012479785 38.0 36.0 40.0 31.0 41.0 20 36.840994680644826 38.0 36.0 40.0 31.0 41.0 21 36.78963094706535 38.0 36.0 40.0 31.0 41.0 22 36.77334894244515 38.0 36.0 40.0 31.0 41.0 23 36.68692036476293 38.0 36.0 40.0 31.0 41.0 24 36.6055197221378 38.0 35.0 40.0 31.0 41.0 25 36.507511885062904 38.0 35.0 40.0 30.0 41.0 26 36.327262289361414 38.0 35.0 40.0 30.0 41.0 27 36.22007471861699 38.0 35.0 40.0 30.0 41.0 28 36.104787419656226 38.0 35.0 40.0 30.0 41.0 29 35.95398876594212 38.0 34.0 40.0 29.0 41.0 30 35.85753683712868 38.0 34.0 40.0 29.0 41.0 31 35.74634192709995 38.0 34.0 40.0 29.0 41.0 32 35.59201496373508 38.0 34.0 40.0 28.0 41.0 33 35.523084100343574 38.0 34.0 40.0 28.0 41.0 34 35.434510520516355 38.0 34.0 40.0 27.0 41.0 35 35.42498683606555 38.0 34.0 40.0 27.0 41.0 36 35.334589691732546 38.0 34.0 40.0 27.0 41.0 37 35.277915983455344 38.0 34.0 40.0 27.0 41.0 38 35.231533907918745 38.0 34.0 40.0 27.0 41.0 39 35.15366782859494 38.0 33.0 40.0 27.0 41.0 40 35.06471652827338 38.0 33.0 40.0 27.0 41.0 41 34.99619215216883 38.0 33.0 40.0 27.0 40.0 42 34.927322574552896 38.0 33.0 40.0 26.0 40.0 43 33.80804482116435 36.0 31.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 5.0 12 0.0 13 2.0 14 9.0 15 19.0 16 37.0 17 99.0 18 179.0 19 356.0 20 681.0 21 1233.0 22 2033.0 23 3477.0 24 5408.0 25 8271.0 26 12327.0 27 17422.0 28 24382.0 29 33835.0 30 45650.0 31 60016.0 32 79626.0 33 105513.0 34 140381.0 35 186898.0 36 239802.0 37 278316.0 38 257225.0 39 95859.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.49092907985037 18.46165198934878 12.771205191030264 26.276213739770593 2 18.520123622164437 20.892571038343632 35.34113038486216 25.246174954629762 3 20.442808489455718 22.73358322921005 29.429304356418058 27.39430392491617 4 15.749881493321727 15.3994269154619 33.64757927440144 35.20311231681494 5 15.92354536960951 35.70202855917142 33.228021857759465 15.146404213459608 6 36.146350432064715 33.97677144032829 14.732412545823625 15.144465581783367 7 30.06323691454887 30.3275161875745 20.683699109355086 18.92554778852155 8 27.32101114025312 35.26346004480116 19.187450674331142 18.228078140614585 9 28.00415992835818 14.599835153771012 18.190993992743266 39.205010925127546 10 16.7670377582914 26.837979170340688 32.77350653443948 23.621476536928434 11 37.00947928353176 21.283048979841983 20.735479336062426 20.97199240056383 12 22.18294929665192 24.094940421471033 29.752555554304827 23.96955472757222 13 31.55504525766916 19.41101868215571 23.800268406682402 25.233667653492724 14 23.084850781643784 19.654660908305225 24.985335189416823 32.27515312063417 15 26.2204311766994 26.761622096899064 21.87014169521458 25.147805031186955 16 25.10796927706549 25.56267220990253 24.199814141505104 25.12954437152688 17 24.861012616114657 25.440976169839143 24.882650247081735 24.815360966964466 18 24.837498889977024 25.258619719261116 25.532842296690696 24.371039094071165 19 25.88679891886889 25.120226432179788 25.31665359653698 23.676321052414348 20 25.10896986115645 24.651765468091998 25.238107745396377 25.00115692535518 21 24.765144152899254 25.280444959745253 25.685556443573937 24.268854443781557 22 25.460299950095866 24.575033175616266 24.694352828463614 25.27031404582425 23 24.929114870805833 24.761266889546775 25.221910790423912 25.087707449223483 24 24.572719324905915 24.73462633812488 25.231103656759636 25.461550680209573 25 25.276630232898455 24.255096412530815 25.008348623508976 25.459924731061754 26 24.9089781159752 24.58241248328712 25.48068685094924 25.02792254978844 27 25.577305752232864 25.071322884733966 24.81579872250426 24.53557264052891 28 25.206776956048095 25.442664655492642 24.450898211831156 24.899660176628107 29 24.9621966823133 25.457861026374147 25.256806160596245 24.323136130716307 30 25.616453604791793 24.988399478195397 24.777151161990812 24.617995755021994 31 25.203900276786573 24.693852536418134 25.18676527422883 24.915481912566463 32 24.66433530573472 25.050248082318056 25.10628079141199 25.179135820535237 33 24.89065491980944 24.545078189393056 25.09064666499069 25.473620225806815 34 25.279444375654286 24.749947782017752 25.641718353088617 24.328889489239344 35 25.1594368212444 24.714114364260137 25.266686928494508 24.859761886000953 36 24.952378450920726 24.535385031011852 25.522773919275377 24.989462598792045 37 24.266540593071205 24.41506479407354 26.06208874430449 25.256305868550765 38 24.949501771659204 23.97330691791333 25.825450606791716 25.25174070363575 39 24.068424943060513 24.250718857132853 26.52216981663046 25.158686383176175 40 24.96413531398954 23.714843539916426 26.66838016692244 24.652640979171593 41 24.352278142365606 23.911333240779307 26.585831979417986 25.150556637437106 42 23.937848719189827 24.100818853005443 26.908770494776324 25.052561933028407 43 23.624165606672896 23.737481754974464 26.681825515644757 25.95652712270788 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 128.0 1 164.5 2 201.0 3 401.5 4 602.0 5 602.0 6 844.5 7 1087.0 8 1012.0 9 937.0 10 1235.5 11 1534.0 12 1534.0 13 2541.0 14 3548.0 15 5179.0 16 6810.0 17 6395.0 18 5980.0 19 5980.0 20 6846.0 21 7712.0 22 7561.5 23 7411.0 24 9127.5 25 10844.0 26 10844.0 27 13144.5 28 15445.0 29 18355.5 30 21266.0 31 25259.5 32 29253.0 33 29253.0 34 34682.0 35 40111.0 36 46648.5 37 53186.0 38 60640.0 39 68094.0 40 68094.0 41 76382.0 42 84670.0 43 93452.5 44 102235.0 45 113176.0 46 124117.0 47 124117.0 48 134444.0 49 144771.0 50 150884.5 51 156998.0 52 157519.5 53 158041.0 54 158041.0 55 147619.0 56 137197.0 57 125439.5 58 113682.0 59 105351.0 60 97020.0 61 97020.0 62 84261.0 63 71502.0 64 60426.5 65 49351.0 66 41037.5 67 32724.0 68 32724.0 69 26720.0 70 20716.0 71 16929.0 72 13142.0 73 10646.5 74 8151.0 75 8151.0 76 6495.5 77 4840.0 78 3838.0 79 2836.0 80 2186.5 81 1537.0 82 1537.0 83 1160.5 84 784.0 85 597.0 86 410.0 87 272.5 88 135.0 89 135.0 90 87.0 91 39.0 92 25.5 93 12.0 94 7.5 95 3.0 96 3.0 97 2.5 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1599066.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.8249509847387 #Duplication Level Percentage of deduplicated Percentage of total 1 84.41127811100175 57.251908004378414 2 8.548357519029782 11.595838594564349 3 2.786961884887633 5.670766597165162 4 1.3476692675913946 3.6562240807210022 5 0.7383191965136676 2.5038231657315584 6 0.48784147766573255 1.9852694586600488 7 0.34518203747297294 1.6388368340691641 8 0.25799077223617184 1.3998569185146594 9 0.18756944065043452 1.144969930651552 >10 0.8506955647583411 9.4232629311208 >50 0.026127949208668375 1.2086869765035118 >100 0.010806202956211845 1.4202000292606443 >500 5.541120125940288E-4 0.2503002498276712 >1k 6.464640146930336E-4 0.8500562288316631 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 3136 0.19611448182876756 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 2464 0.15408995000831735 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 2141 0.13389065867199978 No Hit GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 2096 0.13107651591616606 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 6.253650568519374E-5 7 0.0 0.0 0.0 0.0 6.253650568519374E-5 8 0.0 0.0 0.0 0.0 1.2507301137038747E-4 9 0.0 0.0 0.0 6.253650568519374E-5 1.876095170555812E-4 10 0.0 0.0 0.0 6.253650568519374E-5 1.876095170555812E-4 11 0.0 0.0 0.0 6.253650568519374E-5 1.876095170555812E-4 12 0.0 6.253650568519374E-5 0.0 6.253650568519374E-5 1.876095170555812E-4 13 0.0 6.253650568519374E-5 0.0 6.253650568519374E-5 1.876095170555812E-4 14 0.0 6.253650568519374E-5 0.0 1.2507301137038747E-4 3.1268252842596867E-4 15 0.0 1.2507301137038747E-4 0.0 1.876095170555812E-4 3.1268252842596867E-4 16 0.0 1.2507301137038747E-4 0.0 3.1268252842596867E-4 3.1268252842596867E-4 17 0.0 1.2507301137038747E-4 0.0 3.752190341111624E-4 3.1268252842596867E-4 18 0.0 1.2507301137038747E-4 0.0 3.752190341111624E-4 3.752190341111624E-4 19 0.0 1.876095170555812E-4 0.0 4.377555397963561E-4 3.752190341111624E-4 20 0.0 1.876095170555812E-4 0.0 7.504380682223248E-4 3.752190341111624E-4 21 0.0 1.876095170555812E-4 0.0 0.0010631205966482934 3.752190341111624E-4 22 0.0 1.876095170555812E-4 0.0 0.0015008761364446496 4.377555397963561E-4 23 0.0 1.876095170555812E-4 0.0 0.0018135586648706183 6.253650568519373E-4 24 0.0 1.876095170555812E-4 0.0 0.002814142755833718 6.253650568519373E-4 25 0.0 1.876095170555812E-4 0.0 0.003939799858167205 6.253650568519373E-4 26 0.0 1.876095170555812E-4 0.0 0.00569082201735263 6.253650568519373E-4 27 0.0 1.876095170555812E-4 0.0 0.01138164403470526 6.253650568519373E-4 28 0.0 1.876095170555812E-4 0.0 0.03539566221781965 6.87901562537131E-4 29 0.0 1.876095170555812E-4 0.0 0.07254234659482472 6.87901562537131E-4 30 0.0 1.876095170555812E-4 0.0 0.12338452571688724 6.87901562537131E-4 31 0.0 1.876095170555812E-4 0.0 0.3758443991680143 6.87901562537131E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTCCG 40 0.0019315162 23.125 5 CTTATAC 820 0.0 18.274391 37 CGACAAA 65 0.0015802998 17.076923 14 TACGCTG 90 4.4477067E-5 16.444445 5 GTATTAC 105 9.347596E-6 15.857142 1 CTATTAC 170 1.4879333E-9 15.235294 1 TATACTG 170 1.4879333E-9 15.235294 5 GGACCGT 110 1.4524954E-5 15.136364 6 ATTACGG 245 0.0 14.346938 25 TACGGAT 625 0.0 14.208 27 TCTTATA 1355 0.0 14.062731 37 CATTACG 265 0.0 13.962264 24 TATAGGA 175 3.5679477E-8 13.742857 2 GTTACGG 500 0.0 13.69 25 ACGGATG 705 0.0 13.6453905 28 ATTATAC 150 1.3062963E-6 13.566667 3 GGGCGTC 410 0.0 13.536586 11 ATAGAGT 110 2.457302E-4 13.454545 6 TTACGGG 125 4.846698E-5 13.32 26 TACACCG 125 4.846698E-5 13.32 5 >>END_MODULE