##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727487.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17226304 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51654992272283 31.0 31.0 34.0 30.0 34.0 2 31.710674791295915 31.0 31.0 34.0 30.0 34.0 3 31.819441187151927 31.0 31.0 34.0 30.0 34.0 4 35.54045179975925 37.0 35.0 37.0 33.0 37.0 5 35.42160465762127 37.0 35.0 37.0 33.0 37.0 6 35.41397922618804 37.0 35.0 37.0 33.0 37.0 7 35.29573372210313 37.0 35.0 37.0 32.0 37.0 8 35.22736403583729 37.0 35.0 37.0 32.0 37.0 9 36.858718910336194 39.0 37.0 39.0 33.0 39.0 10 36.68578918611909 39.0 35.0 39.0 32.0 39.0 11 36.71398171076047 39.0 35.0 39.0 32.0 39.0 12 36.54760556878597 39.0 35.0 39.0 32.0 39.0 13 36.62288486259153 39.0 35.0 39.0 32.0 39.0 14 37.67228321292832 39.0 37.0 41.0 32.0 41.0 15 37.6252746381348 39.0 36.0 41.0 32.0 41.0 16 37.52920127265837 39.0 36.0 41.0 32.0 41.0 17 37.51231175300285 39.0 36.0 41.0 32.0 41.0 18 37.37268110443192 39.0 36.0 41.0 32.0 41.0 19 37.382308358194535 39.0 36.0 41.0 32.0 41.0 20 37.2965778381712 39.0 36.0 41.0 31.0 41.0 21 37.12351442305906 39.0 36.0 40.0 31.0 41.0 22 36.95617330333889 39.0 36.0 40.0 31.0 41.0 23 37.10304276529661 39.0 36.0 40.0 31.0 41.0 24 37.07427124239767 39.0 36.0 41.0 31.0 41.0 25 37.054765375091485 39.0 36.0 41.0 31.0 41.0 26 36.86401563562329 39.0 36.0 41.0 30.0 41.0 27 36.8080403666393 39.0 36.0 41.0 30.0 41.0 28 36.50580966178235 39.0 35.0 40.0 30.0 41.0 29 36.35641011559996 39.0 35.0 40.0 29.0 41.0 30 36.28470854804374 39.0 35.0 40.0 29.0 41.0 31 36.160955071964366 39.0 35.0 40.0 29.0 41.0 32 36.04241490223323 38.0 35.0 40.0 28.0 41.0 33 35.83696653675681 38.0 35.0 40.0 27.0 41.0 34 35.771542752293236 38.0 34.0 40.0 27.0 41.0 35 35.559635195106274 38.0 34.0 40.0 26.0 41.0 36 35.45638797504096 38.0 34.0 40.0 26.0 41.0 37 35.38085993373854 38.0 34.0 40.0 26.0 41.0 38 35.286274757487156 38.0 34.0 40.0 25.0 41.0 39 35.240861765820455 38.0 34.0 40.0 25.0 41.0 40 35.05369671869253 38.0 34.0 40.0 24.0 41.0 41 34.88784901276559 38.0 33.0 40.0 24.0 41.0 42 34.87980561587674 38.0 33.0 40.0 24.0 41.0 43 34.61608421632406 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 30.0 11 95.0 12 144.0 13 184.0 14 225.0 15 667.0 16 1270.0 17 1936.0 18 3044.0 19 6018.0 20 11662.0 21 20416.0 22 34702.0 23 56176.0 24 84823.0 25 123089.0 26 169610.0 27 231245.0 28 307686.0 29 393950.0 30 491043.0 31 604108.0 32 732853.0 33 886582.0 34 1084655.0 35 1323893.0 36 1667396.0 37 2188518.0 38 3266025.0 39 3534257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.866490687729645 19.48547988007178 11.404129405820308 26.243900026378263 2 18.806169913174642 22.779384364748235 33.53430892662756 24.880136795449566 3 20.174310171235803 25.161537843521163 29.37517531328833 25.288976671954703 4 14.188255356459518 16.20091576231326 35.07510955338998 34.53571932783724 5 13.507331578497627 38.269782072811445 34.49099702408596 13.731889324604976 6 34.56083789070482 36.07611359929559 15.637016506849061 13.726032003150532 7 28.424837968725036 31.202630581696454 21.81068556551655 18.561845884061956 8 27.98181200099569 33.41762690360044 20.211828375953424 18.38873271945044 9 27.74446567296154 13.42164866009563 18.51782018940337 40.31606547753947 10 16.603027555998082 26.732373932330468 33.24826962301374 23.416328888657716 11 37.573172980112275 21.763867629411394 20.417925981104247 20.245033409372084 12 21.729965986900034 26.019075246785384 29.225230206084834 23.02572856022975 13 30.276622309695682 19.38808231876089 24.96140785626447 25.37388751527896 14 22.851257007887472 21.143444351150425 24.230995807342072 31.774302833620027 15 25.711197248115443 27.579259021552154 21.606939016053587 25.102604714278815 16 25.268153865158773 26.01787940117625 24.447356786458663 24.26660994720632 17 24.671995803626825 26.64986639037602 24.567028423508606 24.111109382488547 18 25.544028481094962 23.906677834084434 26.102807659727823 24.44648602509279 19 25.088771218712964 26.11728551870442 25.028439066209447 23.765504196373175 20 24.78295982701803 24.501878058113917 25.409803519083376 25.30535859578468 21 25.455681032913386 25.565280863498057 24.976472027894086 24.002566075694475 22 25.27132343653055 25.179487137809716 24.487597571713586 25.06159185394615 23 23.73207857007516 24.684848241387126 25.344989848083486 26.238083340454228 24 24.13372015262241 26.255150263225357 24.98553375117495 24.62559583297729 25 24.999274365528436 24.754445294823544 24.291751730376987 25.954528609271033 26 24.83276737714602 25.65656568002051 25.022866193467852 24.487800749365622 27 25.94346413484866 24.73431909712031 24.270766381459424 25.051450386571606 28 24.628237142453774 25.280158761856285 25.569657890630516 24.521946205059425 29 24.596477572902465 25.000493431440663 25.588826250831286 24.814202744825586 30 24.09935990912502 26.18432833880094 25.7774505779069 23.938861174167133 31 25.527228591809365 25.150955190387908 24.094704238355483 25.227111979447248 32 24.048507445357984 25.370508961179368 24.718686028064987 25.86229756539766 33 24.155373085253807 24.916093434784386 25.3760528085421 25.55248067141971 34 25.102889162991666 25.0204280616434 25.373962981264004 24.502719794100926 35 25.279543423824403 25.208524126823722 25.841556029662545 23.670376419689333 36 24.50062416174706 25.534125021827087 25.162129961249956 24.803120855175898 37 25.168074358840993 25.19993261468043 25.42386341260435 24.208129613874224 38 24.51275677011157 24.537974019267278 26.11286205096578 24.836407159655373 39 25.553334017558267 23.949368361315347 25.052820384453916 25.444477236672476 40 25.040919979120304 24.889239154260835 25.80651659229978 24.263324274319086 41 23.84205573058504 25.191062458900067 26.185088803727137 24.78179300678776 42 25.64473493559617 25.07896064065745 26.033320902731077 23.242983521015304 43 24.78156660883263 23.623094077522374 25.954493778816396 25.6408455348286 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1310.0 1 1488.5 2 1667.0 3 2786.5 4 3906.0 5 3906.0 6 6117.5 7 8329.0 8 8442.5 9 8556.0 10 11707.0 11 14858.0 12 14858.0 13 26361.0 14 37864.0 15 52133.0 16 66402.0 17 67046.5 18 67691.0 19 67691.0 20 81547.0 21 95403.0 22 101129.5 23 106856.0 24 131613.5 25 156371.0 26 156371.0 27 186852.5 28 217334.0 29 249209.5 30 281085.0 31 321255.5 32 361426.0 33 361426.0 34 424071.5 35 486717.0 36 572294.0 37 657871.0 38 749175.5 39 840480.0 40 840480.0 41 904519.0 42 968558.0 43 1007456.0 44 1046354.0 45 1149582.5 46 1252811.0 47 1252811.0 48 1517154.5 49 1781498.0 50 1752977.0 51 1724456.0 52 1524226.0 53 1323996.0 54 1323996.0 55 1284097.0 56 1244198.0 57 1202705.5 58 1161213.0 59 1095687.0 60 1030161.0 61 1030161.0 62 873141.5 63 716122.0 64 632817.0 65 549512.0 66 467501.5 67 385491.0 68 385491.0 69 309476.0 70 233461.0 71 202937.0 72 172413.0 73 130360.0 74 88307.0 75 88307.0 76 66714.5 77 45122.0 78 39163.0 79 33204.0 80 25499.5 81 17795.0 82 17795.0 83 15262.0 84 12729.0 85 11392.0 86 10055.0 87 8338.5 88 6622.0 89 6622.0 90 5078.0 91 3534.0 92 2708.0 93 1882.0 94 2003.5 95 2125.0 96 2125.0 97 1166.0 98 207.0 99 279.5 100 352.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1.7226304E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.554614073600824 #Duplication Level Percentage of deduplicated Percentage of total 1 78.55193490459689 33.42747274599734 2 11.010569443626949 9.371010668082532 3 3.868978092977486 4.93928608817619 4 1.888486032330941 3.214551771569154 5 1.0954974245897815 2.3309235061020885 6 0.7056673734321275 1.8017641644441444 7 0.48151707462218973 1.434354129627757 8 0.3582697401958357 1.2196824422626418 9 0.2864418597979857 1.0970480518404981 >10 1.5605985769514832 12.098487500718608 >50 0.11143562423706155 3.246387846359077 >100 0.06290117388423007 5.103608193806706 >500 0.006870071563498786 2.0317408096732317 >1k 0.008437546807407275 7.857126039299671 >5k 0.0016329957178639438 4.731884883650766 >10k+ 7.62064668336507E-4 6.094671158389646 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 70130 0.40710996392493715 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 57950 0.3364041410159719 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 43575 0.2529561767863844 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 34175 0.19838846452494974 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 31295 0.18166984630016977 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 24751 0.1436814304449753 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 23357 0.13558915481812 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC 22345 0.12971441813635706 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC 21915 0.12721823555418504 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG 21556 0.12513421335186004 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT 20617 0.11968324720148908 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 20313 0.1179185041666512 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 20309 0.11789528386356121 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 20307 0.11788367371201623 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGA 20230 0.11743668287753427 No Hit GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC 20141 0.11692003113378238 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 19689 0.11429613688461553 No Hit GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG 19242 0.11170126801431114 No Hit GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG 18962 0.11007584679801309 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 18707 0.10859555247602737 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 18060 0.10483966845122436 No Hit GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA 18044 0.10474678723886446 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCG 18029 0.10465971110227709 No Hit CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAAC 18014 0.10457263496568968 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGG 17800 0.10333034875037617 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 17666 0.1025524685968621 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.805075772493043E-6 5.805075772493043E-6 2 0.0 5.805075772493043E-6 0.0 5.805075772493043E-6 5.805075772493043E-6 3 0.0 5.805075772493043E-6 0.0 1.741522731747913E-5 5.805075772493043E-6 4 0.0 5.805075772493043E-6 0.0 1.741522731747913E-5 1.1610151544986086E-5 5 0.0 1.1610151544986086E-5 0.0 1.741522731747913E-5 1.1610151544986086E-5 6 5.805075772493043E-6 1.1610151544986086E-5 0.0 1.741522731747913E-5 1.1610151544986086E-5 7 5.805075772493043E-6 1.741522731747913E-5 0.0 4.0635530407451304E-5 1.1610151544986086E-5 8 5.805075772493043E-6 2.3220303089972172E-5 0.0 5.805075772493043E-5 3.483045463495826E-5 9 5.805075772493043E-6 4.0635530407451304E-5 0.0 7.546598504240956E-5 5.224568195243739E-5 10 5.805075772493043E-6 4.6440606179944344E-5 0.0 9.868628813238173E-5 5.224568195243739E-5 11 5.805075772493043E-6 4.6440606179944344E-5 0.0 1.1610151544986086E-4 5.224568195243739E-5 12 5.805075772493043E-6 4.6440606179944344E-5 0.0 1.219065912223539E-4 5.224568195243739E-5 13 1.1610151544986086E-5 4.6440606179944344E-5 0.0 1.219065912223539E-4 5.224568195243739E-5 14 1.1610151544986086E-5 6.385583349742347E-5 0.0 1.2771166699484694E-4 6.966090926991652E-5 15 1.741522731747913E-5 6.966090926991652E-5 0.0 1.4512689431232608E-4 7.546598504240956E-5 16 2.9025378862465215E-5 6.966090926991652E-5 0.0 2.2059287935473565E-4 7.546598504240956E-5 17 2.9025378862465215E-5 6.966090926991652E-5 0.0 3.1347409171462434E-4 8.127106081490261E-5 18 2.9025378862465215E-5 6.966090926991652E-5 0.0 3.9474515252952693E-4 8.127106081490261E-5 19 2.9025378862465215E-5 7.546598504240956E-5 0.0 5.688974257043182E-4 8.127106081490261E-5 20 2.9025378862465215E-5 7.546598504240956E-5 0.0 7.836852292865609E-4 8.127106081490261E-5 21 2.9025378862465215E-5 7.546598504240956E-5 0.0 0.0012771166699484695 8.127106081490261E-5 22 2.9025378862465215E-5 9.288121235988869E-5 0.0 0.001886649626060239 8.127106081490261E-5 23 2.9025378862465215E-5 9.288121235988869E-5 0.0 0.0026645297795743067 8.707613658739565E-5 24 3.483045463495826E-5 9.288121235988869E-5 0.0 0.0039590616768402555 8.707613658739565E-5 25 3.483045463495826E-5 9.868628813238173E-5 0.0 0.004783382436534268 8.707613658739565E-5 26 3.483045463495826E-5 9.868628813238173E-5 0.0 0.006989311230081624 8.707613658739565E-5 27 3.483045463495826E-5 9.868628813238173E-5 0.0 0.016010398980535814 8.707613658739565E-5 28 3.483045463495826E-5 9.868628813238173E-5 0.0 0.028851226589290426 8.707613658739565E-5 29 3.483045463495826E-5 9.868628813238173E-5 0.0 0.04395603374931732 9.868628813238173E-5 30 3.483045463495826E-5 1.0449136390487478E-4 0.0 0.06762332767377147 9.868628813238173E-5 31 3.483045463495826E-5 1.0449136390487478E-4 0.0 0.1325879306437411 9.868628813238173E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAGACG 7310 0.0 19.411081 4 AAGACGG 7405 0.0 19.037136 5 GCGCAAG 8300 0.0 16.65 1 CGAACGA 4010 0.0 16.608479 16 CGCAAGA 8450 0.0 16.398224 2 ACGAACG 4085 0.0 16.303549 15 ACGGACC 8660 0.0 15.85104 8 GACGGAC 8690 0.0 15.817607 7 ATAACGA 4340 0.0 15.64401 12 TAACGAA 4290 0.0 15.610723 13 CGGACCA 8845 0.0 15.540419 9 AACGAAC 4315 0.0 15.434531 14 AGACGGA 9100 0.0 15.430221 6 GCAAGAC 9980 0.0 15.052103 3 CGCTTCG 3870 0.0 14.962533 32 CGAACGT 2045 0.0 14.836185 4 TTAGAGT 3980 0.0 14.827889 4 CTAGCGG 4300 0.0 14.799999 29 TTCGGGC 3875 0.0 14.752258 35 TCGTTTA 4430 0.0 14.658013 30 >>END_MODULE