##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727484.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10128293 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39730485680065 31.0 31.0 34.0 30.0 34.0 2 31.57555187236388 31.0 31.0 34.0 30.0 34.0 3 31.67474746238088 31.0 31.0 34.0 30.0 34.0 4 35.3984792896493 37.0 35.0 37.0 33.0 37.0 5 35.27651224150012 37.0 35.0 37.0 33.0 37.0 6 35.301889666896486 37.0 35.0 37.0 32.0 37.0 7 35.15790785278428 37.0 35.0 37.0 32.0 37.0 8 35.13027891274472 37.0 35.0 37.0 32.0 37.0 9 36.70121638463658 39.0 35.0 39.0 32.0 39.0 10 36.5309464289787 38.0 35.0 39.0 32.0 39.0 11 36.59159820909604 39.0 35.0 39.0 32.0 39.0 12 36.42158249173874 38.0 35.0 39.0 32.0 39.0 13 36.51514366734849 38.0 35.0 39.0 32.0 39.0 14 37.47945028841484 39.0 36.0 41.0 32.0 41.0 15 37.45097243928468 39.0 36.0 41.0 32.0 41.0 16 37.33331273098043 39.0 36.0 41.0 32.0 41.0 17 37.403203975240444 39.0 36.0 41.0 32.0 41.0 18 37.294317216138985 39.0 36.0 41.0 32.0 41.0 19 37.350737088668346 39.0 36.0 41.0 32.0 41.0 20 37.319843037716225 39.0 36.0 41.0 31.0 41.0 21 37.153524389549155 39.0 36.0 40.0 31.0 41.0 22 37.02794389933229 39.0 36.0 40.0 31.0 41.0 23 37.150399381218534 39.0 36.0 40.0 31.0 41.0 24 37.16110908323841 39.0 36.0 41.0 31.0 41.0 25 37.12814489075306 39.0 36.0 41.0 31.0 41.0 26 36.92065691622468 39.0 36.0 41.0 30.0 41.0 27 36.87539489625745 39.0 36.0 41.0 30.0 41.0 28 36.62612831204626 39.0 35.0 40.0 30.0 41.0 29 36.49552348061021 39.0 35.0 40.0 30.0 41.0 30 36.40191738133958 39.0 35.0 40.0 30.0 41.0 31 36.23001891829156 38.0 35.0 40.0 30.0 41.0 32 36.0910176078042 38.0 35.0 40.0 29.0 41.0 33 35.89303735585059 38.0 35.0 40.0 28.0 41.0 34 35.817214904821576 38.0 34.0 40.0 28.0 41.0 35 35.62291404879381 38.0 34.0 40.0 27.0 41.0 36 35.51914631616601 38.0 34.0 40.0 27.0 41.0 37 35.410673842077834 38.0 34.0 40.0 26.0 41.0 38 35.32296982324662 38.0 34.0 40.0 26.0 41.0 39 35.24640776091292 38.0 34.0 40.0 25.0 41.0 40 35.04045894011953 38.0 34.0 40.0 25.0 41.0 41 34.881556250396784 38.0 33.0 40.0 24.0 41.0 42 34.84269027367198 38.0 33.0 40.0 24.0 41.0 43 34.54038572936229 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 8.0 11 11.0 12 20.0 13 33.0 14 32.0 15 122.0 16 253.0 17 519.0 18 1039.0 19 2212.0 20 4567.0 21 8909.0 22 16142.0 23 27628.0 24 44307.0 25 65874.0 26 95778.0 27 132989.0 28 178463.0 29 234114.0 30 296702.0 31 368487.0 32 448715.0 33 546372.0 34 664340.0 35 808387.0 36 1015840.0 37 1349425.0 38 1907041.0 39 1909964.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.84906578038372 20.376326000837455 12.7098021354635 25.06480608331532 2 17.452239977654674 24.651952703185028 33.586459238491614 24.309348080668677 3 20.70053660572418 25.943424030090757 30.527148059401522 22.828891304783543 4 14.976018170090457 17.065649660806613 33.886085246546486 34.072246922556445 5 12.883079113133872 39.727099127167826 34.09717708601045 13.292644673687857 6 33.37554511900475 35.554954818151494 16.014643336246294 15.054856726597462 7 26.38867181271316 32.34859023134501 22.18318526132686 19.079552694614975 8 28.349851253315833 33.688016332070966 20.59738990568302 17.36474250893018 9 27.766366948507514 13.324338069603634 19.719729672117502 39.18956530977135 10 16.52880697665441 29.340956072262124 33.56723586096887 20.563001090114593 11 34.88052725172939 23.20051365022714 20.586657593732724 21.332301504310745 12 21.141134048945858 27.867104555525795 30.069410511721966 20.92235088380638 13 30.847843758074532 20.535533480320918 24.880293253759543 23.736329507845007 14 22.2438173935134 22.07697782834679 26.86583020455668 28.81337457358313 15 25.819237259427624 27.67578900017999 23.460360003408272 23.04461373698411 16 22.682361183666387 26.834610728579833 27.20598624072191 23.277041847031875 17 23.327553813855896 27.6864423254738 27.09663908814644 21.88936477252386 18 23.130077299304038 24.92184023507219 29.09972095001596 22.848361515607813 19 23.04374488376274 27.45555445522755 28.848869202342385 20.65183145866732 20 23.07044237365566 25.890335123598813 28.73140617081279 22.307816331932738 21 22.50721814623649 26.769920656916224 28.84187888324321 21.88098231360408 22 23.154474302826745 26.871487623827626 26.848857946743838 23.125180126601787 23 21.802617677036 26.65510367837897 28.0195685492116 23.522710095373426 24 22.170280816323146 28.256785225308946 27.55788166870765 22.01505228966026 25 22.95434186195048 26.241134611725787 26.71085838452738 24.093665141796354 26 22.89750108927536 26.71664415711512 28.027793034818405 22.358061718791113 27 23.022941773110237 26.513263389990794 26.948242907269766 23.515551929629208 28 22.267829337085725 27.27006416579773 28.37095056393017 22.09115593318637 29 22.86280620041304 26.40581191717104 28.128234441874856 22.603147440541065 30 21.871049741550724 28.27161497006455 28.282722468633164 21.57461281975156 31 23.578780748147786 26.773919356400928 26.80697527214112 22.840324623310167 32 20.841083487612373 28.014641756513164 28.116653023367316 23.027621732507146 33 22.040525486377614 27.504861875540133 28.22707636913743 22.227536268944824 34 21.843246438466977 27.195026842134208 28.03293704082218 22.928789678576635 35 21.335194390604617 28.462831792089744 28.804221994762592 21.39775182254305 36 22.635146909750734 27.324831538740042 27.51532760752478 22.524693943984442 37 21.66497355477374 27.527422439299492 28.21346104422532 22.594142961701444 38 22.18968191382299 27.235655603565178 28.37112828390727 22.20353419870456 39 22.253058832322488 25.87703574531266 28.228034082347342 23.641871340017513 40 21.95110271790123 27.026449570524864 28.883504851212344 22.138942860361563 41 21.524782112839745 26.488086393235267 28.775530091793357 23.21160140213163 42 21.84317732514255 27.224330891691224 28.566284565424795 22.36620721774143 43 21.726217833548063 25.78946916326374 29.153214663122405 23.331098340065797 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2507.0 1 2786.5 2 3066.0 3 5411.0 4 7756.0 5 7756.0 6 13169.0 7 18582.0 8 18759.5 9 18937.0 10 25586.0 11 32235.0 12 32235.0 13 62805.0 14 93375.0 15 143040.5 16 192706.0 17 161276.5 18 129847.0 19 129847.0 20 144396.0 21 158945.0 22 137828.5 23 116712.0 24 139105.5 25 161499.0 26 161499.0 27 187572.0 28 213645.0 29 233323.0 30 253001.0 31 272955.0 32 292909.0 33 292909.0 34 319414.0 35 345919.0 36 378275.5 37 410632.0 38 445467.0 39 480302.0 40 480302.0 41 511507.0 42 542712.0 43 574420.0 44 606128.0 45 664657.5 46 723187.0 47 723187.0 48 882609.0 49 1042031.0 50 1050592.5 51 1059154.0 52 876141.0 53 693128.0 54 693128.0 55 654460.5 56 615793.0 57 580906.0 58 546019.0 59 498772.5 60 451526.0 61 451526.0 62 390098.5 63 328671.0 64 276944.5 65 225218.0 66 183915.0 67 142612.0 68 142612.0 69 115516.5 70 88421.0 71 71418.0 72 54415.0 73 43218.0 74 32021.0 75 32021.0 76 25386.0 77 18751.0 78 15097.5 79 11444.0 80 8822.5 81 6201.0 82 6201.0 83 4827.5 84 3454.0 85 2823.5 86 2193.0 87 1751.5 88 1310.0 89 1310.0 90 990.5 91 671.0 92 477.0 93 283.0 94 284.0 95 285.0 96 285.0 97 161.5 98 38.0 99 45.0 100 52.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1.0128293E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.505552528531204 #Duplication Level Percentage of deduplicated Percentage of total 1 77.91079850262369 37.79106329308824 2 11.985571069284926 11.62733494171288 3 4.106930020002679 5.97626729448725 4 1.895137063678703 3.676986815641349 5 1.056115063519438 2.561372234485759 6 0.6437685602243215 1.8735809828506638 7 0.43942186010811557 1.4920080082361362 8 0.3181053568270574 1.2343900876145595 9 0.22301504684907494 0.9735721262631588 >10 1.2526346251337341 10.992488601580506 >50 0.09344802631058033 3.148772822482367 >100 0.06451075239184366 6.004341444995568 >500 0.006307524550417847 2.0609127456264273 >1k 0.003233679144225117 2.84450935246981 >5k 5.935230852075658E-4 2.0507316546162357 >10k+ 4.093262656603902E-4 5.691667593849205 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 92466 0.912947522351496 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 54526 0.5383533039575376 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 52251 0.5158914735187855 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 50573 0.4993240223204443 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 46302 0.45715502108795625 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40160 0.39651301556935603 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 34775 0.34334512242092524 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 32673 0.3225913784287244 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 21245 0.20975893963573133 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 20909 0.2064415000632387 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 17885 0.1765845439108051 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 14759 0.14572050788815055 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 14532 0.14347926151030585 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA 12925 0.127612816888295 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT 12608 0.12448297062496118 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT 12047 0.11894403133874583 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 11551 0.1140468586364948 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10432 0.10299860006024707 No Hit GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA 10386 0.10254442678544154 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 10330 0.1019915201900261 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9746664121979883E-5 2 0.0 9.873332060989942E-6 0.0 0.0 1.9746664121979883E-5 3 0.0 9.873332060989942E-6 0.0 0.0 1.9746664121979883E-5 4 0.0 1.9746664121979883E-5 0.0 0.0 2.9619996182969827E-5 5 0.0 1.9746664121979883E-5 0.0 9.873332060989942E-6 2.9619996182969827E-5 6 0.0 1.9746664121979883E-5 0.0 9.873332060989942E-6 4.936666030494971E-5 7 0.0 1.9746664121979883E-5 0.0 9.873332060989942E-6 4.936666030494971E-5 8 0.0 4.936666030494971E-5 0.0 9.873332060989942E-6 4.936666030494971E-5 9 0.0 7.898665648791953E-5 0.0 5.923999236593965E-5 5.923999236593965E-5 10 0.0 7.898665648791953E-5 0.0 7.898665648791953E-5 5.923999236593965E-5 11 0.0 7.898665648791953E-5 0.0 7.898665648791953E-5 5.923999236593965E-5 12 0.0 7.898665648791953E-5 0.0 8.885998854890948E-5 6.911332442692959E-5 13 0.0 7.898665648791953E-5 0.0 9.873332060989942E-5 7.898665648791953E-5 14 0.0 9.873332060989942E-5 0.0 1.2835331679286925E-4 7.898665648791953E-5 15 0.0 9.873332060989942E-5 0.0 2.0733997328078877E-4 7.898665648791953E-5 16 0.0 9.873332060989942E-5 0.0 5.13413267171477E-4 7.898665648791953E-5 17 0.0 9.873332060989942E-5 0.0 7.701199007572154E-4 7.898665648791953E-5 18 0.0 9.873332060989942E-5 0.0 9.478398778550344E-4 8.885998854890948E-5 19 0.0 1.0860665267088936E-4 0.0 0.0014415064809045314 8.885998854890948E-5 20 0.0 1.0860665267088936E-4 0.0 0.002004286408380958 1.0860665267088936E-4 21 0.0 1.184799847318793E-4 0.0 0.0034951595495904394 1.184799847318793E-4 22 0.0 1.184799847318793E-4 0.0 0.005450079297666448 1.2835331679286925E-4 23 0.0 1.184799847318793E-4 0.0 0.008194865610621651 1.3822664885385918E-4 24 0.0 1.184799847318793E-4 0.0 0.01183812514112694 1.3822664885385918E-4 25 0.0 1.184799847318793E-4 0.0 0.013921398205995817 1.3822664885385918E-4 26 0.0 1.184799847318793E-4 0.0 0.019154264198320486 1.3822664885385918E-4 27 0.0 1.184799847318793E-4 0.0 0.03727182853023703 1.3822664885385918E-4 28 0.0 1.184799847318793E-4 0.0 0.06424577172086154 1.3822664885385918E-4 29 0.0 1.184799847318793E-4 0.0 0.09356956794200168 1.3822664885385918E-4 30 0.0 1.184799847318793E-4 0.0 0.14378533480419653 1.4809998091484914E-4 31 0.0 1.184799847318793E-4 0.0 0.2741330646733857 1.5797331297583907E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCGC 685 0.0 13.773723 10 TATACTG 1425 0.0 13.501755 5 TATACCG 560 0.0 12.553572 5 CAAGACG 1600 0.0 12.140624 4 ATACCGA 520 0.0 12.096154 6 CTTATAC 4195 0.0 12.083433 37 TCTTATA 5965 0.0 11.816429 37 ACGGACC 1365 0.0 11.791208 8 TACCGAC 425 0.0 11.752941 7 GTATTAG 1360 0.0 11.698529 1 ATGTACC 5360 0.0 11.63153 34 GCGCAAG 1540 0.0 11.412337 1 CGAACGA 535 0.0 11.411216 16 GTACTCC 3890 0.0 11.176092 36 GTACCGT 550 0.0 11.1 6 GTGCGCC 1235 0.0 11.08502 11 TGTACCT 5780 0.0 11.010381 35 TAGTACT 825 0.0 10.987879 4 CGGACCA 1550 0.0 10.980644 9 TACACTG 3725 0.0 10.975839 5 >>END_MODULE