##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727460.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2037291 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.262212418353588 31.0 31.0 34.0 30.0 34.0 2 31.563878699704656 31.0 31.0 34.0 30.0 34.0 3 31.665010055019142 31.0 31.0 34.0 30.0 34.0 4 35.455397388002005 37.0 35.0 37.0 33.0 37.0 5 35.2615802062641 37.0 35.0 37.0 33.0 37.0 6 35.24388808471642 37.0 35.0 37.0 32.0 37.0 7 35.17871722792669 37.0 35.0 37.0 32.0 37.0 8 35.16031877625729 37.0 35.0 37.0 32.0 37.0 9 36.78704024118302 39.0 37.0 39.0 32.0 39.0 10 36.55914005412089 39.0 35.0 39.0 32.0 39.0 11 36.68256719339554 39.0 35.0 39.0 32.0 39.0 12 36.5109692233461 39.0 35.0 39.0 32.0 39.0 13 36.62561018529017 39.0 35.0 39.0 32.0 39.0 14 37.72528617659431 39.0 37.0 41.0 32.0 41.0 15 37.67125560364229 39.0 36.0 41.0 32.0 41.0 16 37.6468373933817 39.0 36.0 41.0 32.0 41.0 17 37.571182516390635 39.0 36.0 41.0 32.0 41.0 18 37.57210629213009 39.0 36.0 41.0 32.0 41.0 19 37.58883193417141 39.0 36.0 41.0 32.0 41.0 20 37.5488828056473 39.0 36.0 41.0 32.0 41.0 21 37.4718383382639 39.0 36.0 41.0 32.0 41.0 22 37.38948436919419 39.0 36.0 41.0 31.0 41.0 23 37.3046943220188 39.0 36.0 41.0 31.0 41.0 24 37.24199537523113 39.0 36.0 41.0 31.0 41.0 25 37.10929268327401 39.0 36.0 41.0 31.0 41.0 26 36.94177709517197 39.0 36.0 40.0 31.0 41.0 27 36.87089325972578 39.0 36.0 40.0 30.0 41.0 28 36.743042108368414 39.0 35.0 40.0 30.0 41.0 29 36.63573883161512 39.0 35.0 40.0 30.0 41.0 30 36.764079358324366 39.0 35.0 40.0 30.0 41.0 31 36.67480001629615 39.0 35.0 40.0 30.0 41.0 32 36.7239044397683 39.0 35.0 40.0 30.0 41.0 33 36.60003455569185 39.0 35.0 40.0 30.0 41.0 34 36.6035136855756 39.0 35.0 40.0 30.0 41.0 35 36.51489158887954 39.0 35.0 40.0 30.0 41.0 36 36.443901239440024 38.0 35.0 40.0 30.0 41.0 37 36.36596391973459 38.0 35.0 40.0 30.0 41.0 38 36.246964228477914 38.0 35.0 40.0 29.0 41.0 39 36.1463674065217 38.0 35.0 40.0 29.0 41.0 40 35.99918028401441 38.0 35.0 40.0 28.0 41.0 41 35.897653796144 38.0 34.0 40.0 28.0 41.0 42 35.77852550273869 38.0 34.0 40.0 28.0 41.0 43 35.60272489300743 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 1.0 15 4.0 16 26.0 17 47.0 18 84.0 19 195.0 20 405.0 21 890.0 22 1798.0 23 3408.0 24 5860.0 25 9355.0 26 14178.0 27 20890.0 28 30171.0 29 41108.0 30 53401.0 31 68708.0 32 85829.0 33 105474.0 34 130500.0 35 160703.0 36 200112.0 37 258428.0 38 368101.0 39 477612.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.10590534194674 20.48003942490297 12.762241623803375 26.65181360934692 2 18.329340285702926 22.001815155517793 34.520448968753115 25.14839559002617 3 19.441208938732856 24.375211984934896 31.46624610818975 24.7173329681425 4 14.442217631158238 17.90907631752165 33.654396941821275 33.994309109498836 5 14.154089916462597 36.500676633824035 34.64046127921833 14.704772170495033 6 32.77906788966328 35.97586206388778 16.052296898184892 15.192773148264044 7 26.835930654972707 31.271281324072014 21.309572368404904 20.583215652550372 8 26.841624490561237 33.559270619661106 20.647614896448275 18.951489993329375 9 25.511426693584767 14.165183078902327 19.80855950377241 40.514830723740495 10 16.907353932256118 27.541475420055356 32.78677420162362 22.764396446064897 11 34.61979658281512 21.577820743330236 22.589507340875702 21.212875332978943 12 20.199618022167673 26.137601353954835 29.110372548644253 24.552408075233238 13 29.676516511386936 19.938143348201116 25.954515088909737 24.430825051502215 14 22.195160141580168 21.661706648682 24.688814705410273 31.45431850432756 15 24.723812160363934 28.03875342305051 21.837135686556312 25.40029873002924 16 26.122385069192372 25.724749188996565 24.210925194289867 23.94194054752119 17 22.660189437836813 28.614223495808893 24.908272799516613 23.817314266837677 18 24.717921985617174 24.621813967665886 25.99181952897254 24.668444517744398 19 23.850741008525535 25.853989439898374 26.16621778626617 24.129051765309914 20 23.56869980773488 24.89511807591552 25.998593229931316 25.537588886418288 21 24.801022534336038 25.150358981608424 26.00919554447548 24.03942293958006 22 24.182063338030748 26.707672099862023 25.946563353001608 23.16370120910562 23 23.823989798217337 24.87553324488254 26.152817638717295 25.147659318182825 24 24.81506078414915 25.596539718675437 25.935126597034987 23.653272900140433 25 23.813632907620956 26.204405752541 26.02701332308443 23.954948016753622 26 25.099801648365407 25.671295853169724 26.20524019396345 23.023662304501418 27 24.136512653322477 26.597280408149842 25.783945445201496 23.482261493326188 28 23.1650755832132 25.21132229023738 27.194495042681677 24.429107083867745 29 24.276453388347566 25.09675839141291 26.206025550596358 24.420762669643167 30 23.962752498293078 25.37300758703592 27.444532960681613 23.21970695398939 31 23.15196994440166 26.399174197500503 26.23847059649309 24.21038526160475 32 23.46027150760495 25.236110108963324 25.955300445542633 25.348317937889085 33 22.68880587014815 24.897474145814222 28.463680446239636 23.950039537797988 34 23.75487841452203 25.674486364490885 26.03020383440559 24.540431386581496 35 23.054978400238355 24.717823816038063 27.87397578450992 24.353221999213662 36 23.07525041832512 25.537196208101836 27.548887223278363 23.838666150294678 37 23.62151504129749 26.181875834134644 26.896304946126985 23.300304178440882 38 22.82074578447556 24.695146643263037 28.064719276725807 24.41938829553559 39 23.888192702957014 24.944693713367407 26.269541268282243 24.897572315393333 40 22.91228891699811 24.420762669643167 29.268523740594745 23.39842467276398 41 23.059297861719312 25.269929528967634 26.79995150422792 24.870821105085135 42 24.20822553086427 24.663388784420096 27.906420830406653 23.221964854308982 43 22.915724852267054 24.01807105612306 28.525232772343273 24.540971319266614 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 598.0 1 599.0 2 600.0 3 1013.5 4 1427.0 5 1427.0 6 1820.0 7 2213.0 8 2006.5 9 1800.0 10 2566.5 11 3333.0 12 3333.0 13 5513.0 14 7693.0 15 10878.0 16 14063.0 17 13817.5 18 13572.0 19 13572.0 20 16676.0 21 19780.0 22 18439.5 23 17099.0 24 20419.0 25 23739.0 26 23739.0 27 28615.5 28 33492.0 29 37579.0 30 41666.0 31 47935.0 32 54204.0 33 54204.0 34 61600.5 35 68997.0 36 77799.5 37 86602.0 38 94093.5 39 101585.0 40 101585.0 41 110111.5 42 118638.0 43 125419.5 44 132201.0 45 139653.0 46 147105.0 47 147105.0 48 153413.5 49 159722.0 50 160109.0 51 160496.0 52 176610.5 53 192725.0 54 192725.0 55 167451.0 56 142177.0 57 141237.5 58 140298.0 59 126316.0 60 112334.0 61 112334.0 62 95121.0 63 77908.0 64 70134.0 65 62360.0 66 52375.0 67 42390.0 68 42390.0 69 33358.5 70 24327.0 71 19881.5 72 15436.0 73 11241.5 74 7047.0 75 7047.0 76 5539.0 77 4031.0 78 3282.0 79 2533.0 80 1983.0 81 1433.0 82 1433.0 83 1120.5 84 808.0 85 665.0 86 522.0 87 350.0 88 178.0 89 178.0 90 135.5 91 93.0 92 61.5 93 30.0 94 31.0 95 32.0 96 32.0 97 17.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2037291.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.598647275358985 #Duplication Level Percentage of deduplicated Percentage of total 1 82.53574674924177 48.364831113671755 2 10.057242427903272 11.786816031909577 3 3.0460336044595233 5.354803463298418 4 1.4193550476116858 3.3268914317399014 5 0.7456871534341338 2.184812924092665 6 0.47939436996148393 1.685511695469957 7 0.3207308333953473 1.315607508352612 8 0.22648145561711586 1.0617205545693793 9 0.16865716761462163 0.889477368795928 >10 0.887632000845267 9.382177198139228 >50 0.06316660583969519 2.589388533631828 >100 0.04231792745540326 4.968288436959025 >500 0.005204319005311076 2.0245319039138563 >1k 0.0017627532114763299 1.5755431719493833 >5k 5.036437747075228E-4 2.1544867932488816 >10k+ 8.394062911792048E-5 1.3351118702576288 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGT 27143 1.3323084429273973 No Hit ATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATG 8725 0.42826478887895736 No Hit TCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTT 8547 0.4195276963379311 RNA PCR Primer, Index 27 (95% over 23bp) GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7793 0.38251776501246015 No Hit ACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCC 7071 0.3470785469527917 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6124 0.30059525124294956 No Hit CATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTC 5541 0.27197881893161063 RNA PCR Primer, Index 27 (95% over 21bp) GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4946 0.2427733691455958 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2452 0.12035590399211503 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.8169579112655E-5 2 0.0 0.0 0.0 0.0 9.8169579112655E-5 3 0.0 0.0 0.0 0.0 9.8169579112655E-5 4 0.0 0.0 0.0 4.90847895563275E-5 9.8169579112655E-5 5 0.0 0.0 0.0 1.4725436866898248E-4 9.8169579112655E-5 6 0.0 0.0 0.0 1.4725436866898248E-4 1.4725436866898248E-4 7 0.0 0.0 0.0 1.4725436866898248E-4 1.4725436866898248E-4 8 0.0 0.0 0.0 1.4725436866898248E-4 1.9633915822531E-4 9 0.0 0.0 0.0 1.9633915822531E-4 1.9633915822531E-4 10 0.0 0.0 0.0 2.9450873733796496E-4 1.9633915822531E-4 11 0.0 0.0 0.0 3.9267831645062E-4 1.9633915822531E-4 12 0.0 0.0 0.0 3.9267831645062E-4 1.9633915822531E-4 13 0.0 0.0 0.0 3.9267831645062E-4 1.9633915822531E-4 14 0.0 0.0 0.0 4.417631060069475E-4 1.9633915822531E-4 15 0.0 0.0 0.0 4.90847895563275E-4 2.9450873733796496E-4 16 0.0 0.0 0.0 4.90847895563275E-4 2.9450873733796496E-4 17 0.0 0.0 0.0 4.90847895563275E-4 2.9450873733796496E-4 18 0.0 0.0 0.0 4.90847895563275E-4 2.9450873733796496E-4 19 0.0 0.0 0.0 4.90847895563275E-4 2.9450873733796496E-4 20 0.0 0.0 0.0 5.890174746759299E-4 3.4359352689429247E-4 21 0.0 0.0 0.0 5.890174746759299E-4 3.4359352689429247E-4 22 0.0 0.0 0.0 7.362718433449124E-4 3.4359352689429247E-4 23 0.0 0.0 0.0 9.326110015702224E-4 3.4359352689429247E-4 24 0.0 0.0 0.0 0.0011289501597955324 3.4359352689429247E-4 25 0.0 0.0 0.0 0.0020124763718094275 3.4359352689429247E-4 26 0.0 0.0 0.0 0.003779528795837217 3.4359352689429247E-4 27 0.0 0.0 0.0 0.01236936696819453 3.9267831645062E-4 28 0.0 0.0 0.0 0.027585651730656052 3.9267831645062E-4 29 0.0 0.0 0.0 0.04589427823516621 3.9267831645062E-4 30 0.0 0.0 0.0 0.0726454885433647 3.9267831645062E-4 31 0.0 0.0 0.0 0.14048066771020928 3.9267831645062E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 3635 0.0 31.045391 1 TATACAC 3745 0.0 30.28171 3 TTATACA 3845 0.0 29.686604 2 GCCGTCT 1285 0.0 27.354086 36 GGTATCA 2160 0.0 26.293982 1 CCGTCTT 1440 0.0 24.79514 37 TACACAT 4765 0.0 24.071354 5 ATACACA 4960 0.0 23.423388 4 ACACATC 5525 0.0 20.9276 6 CACATCT 5895 0.0 19.73961 7 ACATCTC 5940 0.0 19.621212 8 ATCTCCG 6270 0.0 18.5 10 TGCCGTC 1950 0.0 18.025642 35 ATGCCGT 1955 0.0 17.88491 34 GTATCAA 3260 0.0 17.36503 2 TATGCCG 2105 0.0 17.049881 33 CATCTCC 6980 0.0 16.724213 9 TGTGCGA 115 1.243272E-6 16.086956 10 TCTCCGA 7320 0.0 15.795766 11 CGAGACG 7380 0.0 15.642277 23 >>END_MODULE