##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727436.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3376005 Sequences flagged as poor quality 0 Sequence length 43 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.257371360528197 31.0 31.0 34.0 30.0 34.0 2 31.538633088517344 31.0 31.0 34.0 30.0 34.0 3 31.65599784360509 31.0 31.0 34.0 30.0 34.0 4 35.43049343825024 37.0 35.0 37.0 33.0 37.0 5 35.22603432163163 37.0 35.0 37.0 32.0 37.0 6 35.227415539965136 37.0 35.0 37.0 32.0 37.0 7 35.14678562383646 37.0 35.0 37.0 32.0 37.0 8 35.15583655829894 37.0 35.0 37.0 32.0 37.0 9 36.78030127325049 39.0 37.0 39.0 32.0 39.0 10 36.546574131258694 39.0 35.0 39.0 32.0 39.0 11 36.66976648435059 39.0 35.0 39.0 32.0 39.0 12 36.50596785253576 39.0 35.0 39.0 32.0 39.0 13 36.61076360965105 39.0 35.0 39.0 32.0 39.0 14 37.70199629443677 40.0 37.0 41.0 32.0 41.0 15 37.645684174045954 39.0 36.0 41.0 32.0 41.0 16 37.574023142738234 39.0 36.0 41.0 32.0 41.0 17 37.55464906005767 39.0 36.0 41.0 32.0 41.0 18 37.51530373918285 39.0 36.0 41.0 32.0 41.0 19 37.510503687050225 39.0 36.0 41.0 32.0 41.0 20 37.50669356236143 39.0 36.0 41.0 32.0 41.0 21 37.430761506573596 39.0 36.0 41.0 32.0 41.0 22 37.39159479917832 39.0 36.0 41.0 31.0 41.0 23 37.30415861350916 39.0 36.0 41.0 31.0 41.0 24 37.24254466447769 39.0 36.0 41.0 31.0 41.0 25 37.155259841143604 39.0 36.0 41.0 31.0 41.0 26 36.94762152307239 39.0 36.0 40.0 31.0 41.0 27 36.87486689148861 39.0 36.0 40.0 30.0 41.0 28 36.74246839089397 39.0 36.0 40.0 30.0 41.0 29 36.614715025599786 39.0 35.0 40.0 30.0 41.0 30 36.71616037298523 39.0 35.0 40.0 30.0 41.0 31 36.69942639302963 39.0 35.0 40.0 30.0 41.0 32 36.60692030965594 39.0 35.0 40.0 30.0 41.0 33 36.547176618518044 39.0 35.0 40.0 30.0 41.0 34 36.505368031149246 39.0 35.0 40.0 30.0 41.0 35 36.420886521198874 38.0 35.0 40.0 30.0 41.0 36 36.363697921063505 38.0 35.0 40.0 30.0 41.0 37 36.2581483143538 38.0 35.0 40.0 30.0 41.0 38 36.1611380907315 38.0 35.0 40.0 29.0 41.0 39 36.052282505505765 38.0 35.0 40.0 29.0 41.0 40 35.92407979253585 38.0 35.0 40.0 28.0 41.0 41 35.78389931294533 38.0 34.0 40.0 28.0 41.0 42 35.677621922953314 38.0 34.0 40.0 27.0 41.0 43 35.51473827793502 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 7.0 14 11.0 15 19.0 16 75.0 17 141.0 18 280.0 19 535.0 20 1039.0 21 2098.0 22 3739.0 23 6369.0 24 10451.0 25 16778.0 26 24939.0 27 36695.0 28 51051.0 29 69317.0 30 90506.0 31 114259.0 32 140773.0 33 173097.0 34 213474.0 35 262440.0 36 328592.0 37 427405.0 38 629214.0 39 772698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.85470548769922 18.838834658124025 11.828270396518963 26.47818945765779 2 17.9101630477443 22.713710435855397 32.301522065281304 27.074604451119 3 21.07277684719069 24.20956130100518 29.268143856422014 25.449517995382116 4 15.403768655555902 16.55963187258313 32.50786062224434 35.52873884961663 5 14.709901199790876 36.49103007845071 33.75149029696342 15.047578424794986 6 35.24612670893556 32.989258013539676 15.927079491884639 15.837535785640128 7 27.99240522451833 30.68215242572212 21.61593362569072 19.709508724068833 8 28.519685249281324 32.02261252575159 20.75186500019994 18.705837224767144 9 27.289207213851874 13.625690720244787 18.91306440600651 40.17203765989683 10 17.80666794036146 26.495665735092217 32.2343124491818 23.463353875364522 11 36.12663488353839 21.484387611985174 19.893927882215813 22.49504962226063 12 21.90115239758235 26.28971224864892 28.555082116288332 23.254053237480395 13 31.29245957870323 18.653911946220457 24.214626459380245 25.839002015696067 14 23.269870749599008 20.867623122596086 24.22760037381461 31.634905753990296 15 27.616250568349276 25.543504823008263 21.71149035620504 25.128754252437425 16 25.389210027828753 24.765425406656686 25.416668517967246 24.428696047547323 17 25.35286529492699 26.23215901635217 24.870697762592176 23.544277926128665 18 26.19649556206226 22.53942159445854 26.671672583423305 24.592410260055892 19 25.179524319424885 26.19649556206226 25.52315532708038 23.10082479143248 20 24.783109029755586 23.596647516813512 26.282188563109354 25.338054890321548 21 24.803132696782143 25.27200048578127 25.599014219469463 24.325852597967124 22 25.0214973022848 25.034263871054698 24.33627912280936 25.60795970385115 23 23.1577559867358 24.189537633978624 25.809944001860185 26.842762377425387 24 24.24196646628189 26.80481812082624 24.984619394817248 23.968596018074617 25 25.246378485813853 24.229140655893577 23.811191037927966 26.713289820364604 26 25.064388234022168 24.916639637678262 25.286485061485394 24.73248706681418 27 26.005470963461253 24.27058016797961 24.104081599405212 25.61986726915393 28 24.29466188586806 24.610093883154793 26.11539378644285 24.979850444534293 29 24.718002491110056 23.991611386831476 26.14812478062088 25.14226134143759 30 23.80701450382923 25.80804827007069 26.652241332580967 23.732695893519114 31 26.228100965490274 24.359294491566217 23.633880873991597 25.778723668951915 32 23.058733621543805 25.18547810207627 25.5708152091007 26.184973067279227 33 24.215752050130256 24.629436271569503 25.764801888622795 25.390009789677443 34 24.271824241966467 24.79098816500568 25.782218924438798 25.154968668589056 35 24.37380868807955 25.80564898452461 26.694154777614372 23.126387549781473 36 25.21536549857006 25.167824099786586 24.7192169442877 24.89759345735566 37 24.658820114306703 25.40718985901976 25.625110152384252 24.308879874289286 38 24.93926993591538 24.896615970651702 25.76092156261617 24.40319253081675 39 25.30576820828168 23.428253216449622 25.03873661324554 26.22724196202316 40 25.01977929535057 25.11690592875307 25.948036214401345 23.915278561495022 41 23.837642420553287 24.997445205205562 25.413380608144838 25.75153176609632 42 26.000909358842772 25.54149060798192 25.69548919506932 22.762110838105986 43 25.418356904092263 23.18272632890058 25.475228857777164 25.923687909229994 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 134.0 1 225.0 2 316.0 3 992.5 4 1669.0 5 1669.0 6 2422.5 7 3176.0 8 2947.5 9 2719.0 10 3465.0 11 4211.0 12 4211.0 13 7325.5 14 10440.0 15 15600.5 16 20761.0 17 18405.5 18 16050.0 19 16050.0 20 19013.0 21 21976.0 22 18466.5 23 14957.0 24 17731.5 25 20506.0 26 20506.0 27 24697.0 28 28888.0 29 33596.5 30 38305.0 31 45079.0 32 51853.0 33 51853.0 34 62349.5 35 72846.0 36 89280.0 37 105714.0 38 123701.0 39 141688.0 40 141688.0 41 153975.5 42 166263.0 43 180261.0 44 194259.0 45 223864.0 46 253469.0 47 253469.0 48 339574.5 49 425680.0 50 423422.0 51 421164.0 52 340119.0 53 259074.0 54 259074.0 55 250371.0 56 241668.0 57 231293.0 58 220918.0 59 206693.5 60 192469.0 61 192469.0 62 163572.5 63 134676.0 64 119136.5 65 103597.0 66 88796.5 67 73996.0 68 73996.0 69 61638.0 70 49280.0 71 42830.5 72 36381.0 73 27032.5 74 17684.0 75 17684.0 76 13871.0 77 10058.0 78 8690.5 79 7323.0 80 6045.0 81 4767.0 82 4767.0 83 4058.5 84 3350.0 85 2885.0 86 2420.0 87 1567.5 88 715.0 89 715.0 90 512.5 91 310.0 92 218.0 93 126.0 94 131.5 95 137.0 96 137.0 97 71.0 98 5.0 99 6.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3376005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.07087803486649 #Duplication Level Percentage of deduplicated Percentage of total 1 80.63585286985702 37.149645428046206 2 10.623886106363125 9.789035221251362 3 3.437700612652457 4.751336569376914 4 1.6507588795734485 3.0420764402320484 5 0.9325093573026353 2.1480762433330725 6 0.5584808861451177 1.5437822874237523 7 0.4093034977078855 1.319988006550097 8 0.2857868324688303 1.0533160242113841 9 0.21035431519193407 0.872208719938391 >10 1.0817358755307087 8.809996091565313 >50 0.07127130825591936 2.29574935703018 >100 0.07503798697403985 7.489356489054644 >500 0.015942882471375295 5.220477185860579 >1k 0.010092873177298227 8.353693472347718 >5k 8.357156134068597E-4 2.7200289604598167 >10k+ 4.5000071491138594E-4 3.4412335033186685 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 27342 0.8098921654440677 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 27236 0.8067523596677139 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 16651 0.4932160941704767 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 14379 0.42591761564334174 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 10268 0.30414646897738595 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC 10202 0.30219149556946745 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10113 0.29955524354969854 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 9744 0.2886251649508813 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 9034 0.2675943904111517 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 8481 0.2512140829175312 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 8332 0.2468005823451091 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 7850 0.23252335230546164 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 7272 0.21540252458156903 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6673 0.19765965986424783 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 6587 0.19511227027211156 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC 6216 0.18412295005487256 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA 5874 0.17399263330474926 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT 5512 0.16326990037040823 No Hit CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGT 5241 0.15524266107425788 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC 5024 0.14881494547549545 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC 4977 0.14742276744258376 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 4866 0.14413485762017533 No Hit CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA 3997 0.11839437441591466 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 3987 0.1180981663238058 No Hit GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 3964 0.11741688771195541 No Hit CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT 3887 0.11513608540271712 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC 3823 0.11324035361322037 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC 3715 0.11004130621844459 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3710 0.10989320217239015 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGG 3481 0.10311003686309707 No Hit GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 3474 0.10290269119862085 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTC 3428 0.10154013397492005 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.88624276326605E-5 2 0.0 0.0 0.0 0.0 8.88624276326605E-5 3 0.0 0.0 0.0 0.0 8.88624276326605E-5 4 0.0 0.0 0.0 2.9620809210886834E-5 8.88624276326605E-5 5 0.0 0.0 0.0 2.9620809210886834E-5 8.88624276326605E-5 6 0.0 0.0 0.0 8.88624276326605E-5 2.3696647368709467E-4 7 0.0 0.0 0.0 1.1848323684354733E-4 2.3696647368709467E-4 8 0.0 0.0 0.0 1.1848323684354733E-4 2.3696647368709467E-4 9 0.0 0.0 0.0 1.77724855265321E-4 2.9620809210886834E-4 10 0.0 0.0 0.0 2.0734566447620784E-4 2.9620809210886834E-4 11 0.0 0.0 0.0 2.0734566447620784E-4 3.2582890131975517E-4 12 0.0 0.0 0.0 2.9620809210886834E-4 3.8507051974152884E-4 13 0.0 0.0 0.0 3.2582890131975517E-4 3.8507051974152884E-4 14 0.0 0.0 0.0 3.8507051974152884E-4 4.1469132895241567E-4 15 0.0 0.0 0.0 4.1469132895241567E-4 4.7393294737418934E-4 16 0.0 0.0 0.0 5.035537565850762E-4 5.33174565795963E-4 17 0.0 0.0 0.0 5.924161842177367E-4 5.33174565795963E-4 18 0.0 0.0 0.0 7.701410394830577E-4 6.516578026395103E-4 19 0.0 0.0 0.0 8.293826579048313E-4 6.516578026395103E-4 20 0.0 0.0 0.0 0.0010367283223810392 7.10899421061284E-4 21 0.0 0.0 0.0 0.0013921780329116812 7.10899421061284E-4 22 0.0 0.0 0.0 0.0019253525987076442 7.405202302721708E-4 23 0.0 0.0 0.0 0.002517768782925381 8.590034671157182E-4 24 0.0 0.0 0.0 0.0034952554868846464 8.88624276326605E-4 25 0.0 0.0 0.0 0.004058050861891496 8.88624276326605E-4 26 0.0 0.0 0.0 0.005687195368490272 9.182450855374918E-4 27 0.0 0.0 0.0 0.008086480914572106 9.182450855374918E-4 28 0.0 0.0 0.0 0.015373199980450267 9.478658947483787E-4 29 0.0 0.0 0.0 0.025029583783199374 9.478658947483787E-4 30 0.0 0.0 0.0 0.03874401844783998 9.478658947483787E-4 31 0.0 0.0 0.0 0.08033163457992509 9.774867039592655E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACAC 1105 0.0 22.43439 3 TTATACA 1240 0.0 19.395163 2 CTTATAC 1180 0.0 18.813559 1 CTAACGC 85 2.7256476E-5 17.411764 3 TACACAT 1315 0.0 17.304182 5 CTAGCGG 700 0.0 16.65 29 ATACACA 1535 0.0 16.631922 4 TATGCCG 570 0.0 16.22807 33 ATCTCCG 1435 0.0 15.470384 10 TCTAACG 120 1.9381077E-6 15.416666 2 CGCAATA 805 0.0 15.167702 36 TCTAGCG 765 0.0 14.9934635 28 ACACATC 1530 0.0 14.872549 6 TATACTG 375 0.0 14.800001 5 GCCGTCT 605 0.0 14.677687 36 CAAGACG 1035 0.0 14.657005 4 AAGACGG 990 0.0 14.388887 5 TAGCGGC 805 0.0 14.248447 30 TAGTACT 260 0.0 14.230769 4 ATGCCGT 640 0.0 13.875 34 >>END_MODULE