##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727421.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1382637 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.00789505850053 31.0 31.0 33.0 28.0 34.0 2 31.306742839950036 31.0 31.0 34.0 28.0 34.0 3 31.409126184240694 31.0 31.0 34.0 28.0 34.0 4 35.21586793930728 37.0 35.0 37.0 33.0 37.0 5 35.00052942312407 35.0 35.0 37.0 32.0 37.0 6 35.03224707569666 37.0 35.0 37.0 32.0 37.0 7 34.95425191138383 37.0 35.0 37.0 32.0 37.0 8 34.96005169831272 37.0 35.0 37.0 32.0 37.0 9 36.54324743226169 38.0 35.0 39.0 32.0 39.0 10 36.280460453466816 38.0 35.0 39.0 32.0 39.0 11 36.42286370175252 38.0 35.0 39.0 32.0 39.0 12 36.24776351276582 38.0 35.0 39.0 32.0 39.0 13 36.36638900882878 38.0 35.0 39.0 32.0 39.0 14 37.383132376755434 39.0 36.0 41.0 32.0 41.0 15 37.332508821910594 39.0 36.0 41.0 32.0 41.0 16 37.29549476833037 39.0 36.0 41.0 32.0 41.0 17 37.2521753721331 39.0 36.0 41.0 31.0 41.0 18 37.22600942980696 39.0 36.0 40.0 31.0 41.0 19 37.229268419693675 39.0 36.0 40.0 31.0 41.0 20 37.20587616272384 39.0 36.0 40.0 31.0 41.0 21 37.12614012210002 39.0 36.0 40.0 31.0 41.0 22 37.06649322996564 39.0 36.0 40.0 31.0 41.0 23 36.977604389293795 39.0 36.0 40.0 31.0 41.0 24 36.8947019355044 39.0 36.0 40.0 30.0 41.0 25 36.795525506694815 39.0 36.0 40.0 30.0 41.0 26 36.57661844721355 39.0 35.0 40.0 30.0 41.0 27 36.489159482930084 38.0 35.0 40.0 30.0 41.0 28 36.323467403230204 38.0 35.0 40.0 30.0 41.0 29 36.18480772610599 38.0 35.0 40.0 29.0 41.0 30 36.29385370129687 38.0 35.0 40.0 30.0 41.0 31 36.27498613157322 38.0 35.0 40.0 30.0 41.0 32 36.20667463694375 38.0 35.0 40.0 30.0 41.0 33 36.09719687813938 38.0 35.0 40.0 29.0 41.0 34 36.05950947356392 38.0 35.0 40.0 29.0 41.0 35 35.9648020413167 38.0 35.0 40.0 29.0 41.0 36 35.87224629458057 38.0 34.0 40.0 28.0 41.0 37 35.768003460054956 38.0 34.0 40.0 28.0 41.0 38 35.642827437715034 38.0 34.0 40.0 27.0 41.0 39 35.524669164791625 38.0 34.0 40.0 27.0 41.0 40 35.38623008063577 38.0 34.0 40.0 26.0 41.0 41 35.22179284946085 38.0 33.0 40.0 26.0 41.0 42 35.103478353320504 38.0 33.0 40.0 26.0 41.0 43 34.91653413007174 38.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 4.0 15 15.0 16 60.0 17 111.0 18 153.0 19 285.0 20 629.0 21 1171.0 22 2132.0 23 3648.0 24 5752.0 25 8849.0 26 12792.0 27 18380.0 28 24768.0 29 32690.0 30 41766.0 31 51733.0 32 63087.0 33 75949.0 34 92935.0 35 113330.0 36 140711.0 37 181673.0 38 263865.0 39 246145.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.070432803403925 20.776530643979584 12.89116376894297 25.261872783673518 2 19.194915223590865 23.21614422295946 32.55858189821334 25.030358655236334 3 21.508176043314332 24.72008198825867 29.34103455932396 24.43070740910304 4 16.109506689029732 17.188604094928746 33.01698131903023 33.68490789701129 5 14.826017240967804 37.07053984523776 33.37043634735654 14.7330065664379 6 34.571185350891085 34.70607252662846 15.544788690017697 15.17795343246275 7 27.86031329987553 31.111202723491417 21.623535316934237 19.404948659698825 8 27.756092163018923 33.19728894858159 20.269600770122597 18.777018118276885 9 26.80276891186913 13.844776322346359 19.5249367693762 39.82751799640831 10 17.502641691203113 26.959281431062525 32.27738010772169 23.260696770012665 11 36.12300263915981 21.818380384728602 20.49937908503823 21.559237891073362 12 21.402436069626376 26.557295949696126 29.005950224100758 23.034317756576744 13 30.85422999673812 19.218999636202415 24.69766106360527 25.229109303454194 14 22.881421515553253 21.100693819129678 24.881874273580124 31.136010391736953 15 26.339379027177777 27.057137918340104 21.998109409772777 24.60537364470935 16 25.107819333635657 25.513782720988953 25.016689123754105 24.361708821621296 17 24.19167142207246 26.81419635088603 25.291092311286334 23.703039915755184 18 24.936769376199248 23.786865243733534 26.916247720840687 24.360117659226535 19 24.641247124154788 26.004005389700986 26.314932986749234 23.039814499394996 20 24.498331810880224 24.359828356972944 26.491262710313695 24.650577121833134 21 24.995063780298082 25.470387382950115 25.93580238341662 23.598746453335185 22 24.692019669660223 25.46959180175274 25.65149059369885 24.186897934888187 23 23.357034420458877 24.687390833602745 26.51621502968603 25.43935971625235 24 24.022791231537997 26.540444093424377 25.859860541848654 23.57690413318897 25 24.742502912912066 25.071077947429444 25.174648154215458 25.011770985443032 26 24.613401782246534 25.749274755413026 25.957138424619043 23.680185037721397 27 25.218115817817694 25.03686795594216 25.297746263118952 24.447269963121197 28 24.156231896007412 25.13508607103672 26.844066808569423 23.864615224386444 29 24.08998167993479 25.173201642947497 26.53017386342185 24.206642813695858 30 23.643443651515184 26.17990115988506 26.83820843793418 23.338446750665575 31 25.281039057974002 25.289645800018373 25.097476778069733 24.331838363937898 32 23.377068601520136 25.755133126048268 25.824493341347004 25.043304931084588 33 23.88341987086994 25.277567430930898 26.415320868745738 24.42369182945343 34 24.249965826171294 25.539819923812253 26.101500249161564 24.10871400085489 35 24.491967161301194 25.771840331193218 26.91632004640408 22.819872461101504 36 24.278968377093914 25.903328205450887 25.70262476702128 24.115078650433915 37 24.21886583391013 25.82391473683982 26.132672566986127 23.824546862263922 38 24.016064954141978 25.274168129451187 26.627162443938644 24.082604472468187 39 24.66084735183566 24.48205855911566 25.75846010196458 25.098633987084103 40 24.478514606509155 25.51016644281905 26.6251373281635 23.386181622508296 41 23.49879252471907 25.525065508879045 26.449458534669624 24.526683431732263 42 25.06601515799158 25.847999149451372 26.312256940903506 22.773728751653543 43 24.51446041151799 24.410311600224787 26.343790886545058 24.731437101712164 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 125.0 1 170.0 2 215.0 3 474.0 4 733.0 5 733.0 6 1182.5 7 1632.0 8 1489.5 9 1347.0 10 1845.5 11 2344.0 12 2344.0 13 4277.5 14 6211.0 15 9296.0 16 12381.0 17 10935.0 18 9489.0 19 9489.0 20 11352.5 21 13216.0 22 11437.0 23 9658.0 24 11413.0 25 13168.0 26 13168.0 27 15758.5 28 18349.0 29 20675.5 30 23002.0 31 26142.5 32 29283.0 33 29283.0 34 34276.0 35 39269.0 36 46260.5 37 53252.0 38 59607.0 39 65962.0 40 65962.0 41 70687.0 42 75412.0 43 79338.0 44 83264.0 45 91895.5 46 100527.0 47 100527.0 48 119670.5 49 138814.0 50 136684.0 51 134554.0 52 119896.5 53 105239.0 54 105239.0 55 100623.0 56 96007.0 57 93852.5 58 91698.0 59 85388.5 60 79079.0 61 79079.0 62 66314.5 63 53550.0 64 47311.5 65 41073.0 66 35143.0 67 29213.0 68 29213.0 69 24400.5 70 19588.0 71 17375.0 72 15162.0 73 11295.5 74 7429.0 75 7429.0 76 5782.0 77 4135.0 78 3633.5 79 3132.0 80 2597.0 81 2062.0 82 2062.0 83 1721.5 84 1381.0 85 1211.0 86 1041.0 87 692.0 88 343.0 89 343.0 90 250.5 91 158.0 92 113.0 93 68.0 94 68.5 95 69.0 96 69.0 97 35.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1382637.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.50688736937087 #Duplication Level Percentage of deduplicated Percentage of total 1 87.68074135431605 51.299272588799084 2 7.17892060799238 8.400325988909312 3 2.0541401864044624 3.6054404558059314 4 0.9196048800163212 2.1521287655775487 5 0.4940872089077836 1.4453752341107255 6 0.3295122829417928 1.1567242814939842 7 0.2182536068400845 0.8938537435346243 8 0.1639090682347009 0.7671847515220936 9 0.11566828144263719 0.6090652003115758 >10 0.6741241354826124 7.426457605328383 >50 0.07305326061604031 3.038070769554453 >100 0.08386340638836609 10.533494187611886 >500 0.009909979239920786 3.8302447463610423 >1k 0.003963991695968313 4.029696647853703 >5k 2.477494809980196E-4 0.8126650332257256 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 5688 0.411387804608151 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 5525 0.3995987377742676 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 4776 0.34542689078912253 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 4688 0.3390622412100935 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 3699 0.26753225900941463 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 3075 0.22240110744902675 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 2655 0.1920243708218426 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2292 0.16577019130834775 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC 1985 0.14356624334514412 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 1920 0.13886508172427037 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 1890 0.13669531482232863 No Hit CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT 1889 0.13662298925893057 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 1866 0.13495950130077525 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 1848 0.1336576411596102 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 1811 0.1309815953138821 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.232556339805748E-5 2 0.0 0.0 0.0 7.232556339805748E-5 7.232556339805748E-5 3 0.0 0.0 0.0 7.232556339805748E-5 7.232556339805748E-5 4 0.0 0.0 0.0 7.232556339805748E-5 7.232556339805748E-5 5 0.0 0.0 0.0 7.232556339805748E-5 7.232556339805748E-5 6 0.0 0.0 0.0 1.4465112679611496E-4 7.232556339805748E-5 7 0.0 0.0 0.0 1.4465112679611496E-4 7.232556339805748E-5 8 0.0 0.0 0.0 1.4465112679611496E-4 7.232556339805748E-5 9 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 10 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 11 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 12 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 13 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 14 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 15 0.0 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 16 7.232556339805748E-5 7.232556339805748E-5 0.0 2.1697669019417245E-4 7.232556339805748E-5 17 7.232556339805748E-5 7.232556339805748E-5 0.0 2.893022535922299E-4 7.232556339805748E-5 18 7.232556339805748E-5 7.232556339805748E-5 0.0 3.616278169902874E-4 7.232556339805748E-5 19 7.232556339805748E-5 1.4465112679611496E-4 0.0 4.339533803883449E-4 7.232556339805748E-5 20 7.232556339805748E-5 1.4465112679611496E-4 0.0 5.062789437864023E-4 7.232556339805748E-5 21 7.232556339805748E-5 1.4465112679611496E-4 0.0 8.679067607766898E-4 7.232556339805748E-5 22 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.0010848834509708622 7.232556339805748E-5 23 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.0013018601411650347 1.4465112679611496E-4 24 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.0022420924653397817 1.4465112679611496E-4 25 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.002820696972524242 1.4465112679611496E-4 26 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.0036886037333009316 1.4465112679611496E-4 27 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.007521858593397978 1.4465112679611496E-4 28 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.014392787116213439 1.4465112679611496E-4 29 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.02582022613310652 1.4465112679611496E-4 30 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.042816733531650025 1.4465112679611496E-4 31 7.232556339805748E-5 1.4465112679611496E-4 0.0 0.09214276776912524 1.4465112679611496E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACAC 460 0.0 19.706522 3 TATGCCG 230 0.0 18.5 33 GCCGTCT 260 0.0 17.076923 36 TATACTG 165 5.4569682E-11 16.81818 5 AAGACGG 430 0.0 16.77907 5 TTATACA 565 0.0 16.371681 2 TACCGTG 125 1.658318E-7 16.279999 7 CAAGACG 490 0.0 16.234695 4 TGCCGTC 270 0.0 15.759258 35 TACACAT 605 0.0 15.289256 5 ATACACA 695 0.0 15.172662 4 ATGCCGT 285 0.0 14.929824 34 CGCTTCG 310 0.0 14.919355 32 CTTCGGG 325 0.0 14.8 34 TAACGCC 350 0.0 14.8 4 TTCGGGC 300 0.0 14.8 35 ATCTCCG 535 0.0 14.523364 10 CGCAAGA 500 0.0 14.429999 2 CGCATCG 360 0.0 14.388889 13 TCTATAC 90 8.2755083E-4 14.388889 3 >>END_MODULE