##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727410.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4815873 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26628318479329 33.0 31.0 34.0 30.0 34.0 2 32.399793142385604 34.0 31.0 34.0 31.0 34.0 3 32.49492833386595 34.0 31.0 34.0 30.0 34.0 4 36.039365863676224 37.0 35.0 37.0 35.0 37.0 5 35.84355401398666 37.0 35.0 37.0 35.0 37.0 6 35.86030092570963 37.0 35.0 37.0 35.0 37.0 7 35.82871537517705 37.0 35.0 37.0 35.0 37.0 8 35.78203827218866 37.0 35.0 37.0 35.0 37.0 9 37.613583871501596 39.0 37.0 39.0 35.0 39.0 10 37.44111462241633 39.0 37.0 39.0 35.0 39.0 11 37.552375862071116 39.0 37.0 39.0 35.0 39.0 12 37.48067172867723 39.0 37.0 39.0 35.0 39.0 13 37.56095810666103 39.0 37.0 39.0 35.0 39.0 14 38.758920552929865 40.0 38.0 41.0 35.0 41.0 15 38.68395782031627 40.0 38.0 41.0 35.0 41.0 16 38.652662559830794 40.0 38.0 41.0 35.0 41.0 17 38.59855959656743 40.0 38.0 41.0 34.0 41.0 18 38.57204477775888 40.0 38.0 41.0 34.0 41.0 19 38.627128040959555 40.0 38.0 41.0 34.0 41.0 20 38.58460677845948 40.0 38.0 41.0 34.0 41.0 21 38.534188297739576 40.0 38.0 41.0 34.0 41.0 22 38.49029199897921 40.0 38.0 41.0 34.0 41.0 23 38.411964144403306 40.0 38.0 41.0 34.0 41.0 24 38.36778170852927 40.0 38.0 41.0 34.0 41.0 25 38.25329239371553 40.0 38.0 41.0 34.0 41.0 26 38.133277393319965 40.0 38.0 41.0 34.0 41.0 27 38.03593138772555 40.0 37.0 41.0 33.0 41.0 28 37.934377422328204 40.0 37.0 41.0 33.0 41.0 29 37.83200200669744 40.0 37.0 41.0 33.0 41.0 30 37.75157505191686 40.0 37.0 41.0 33.0 41.0 31 37.628482104906006 40.0 37.0 41.0 33.0 41.0 32 37.512934207359706 40.0 36.0 41.0 33.0 41.0 33 37.394746082382156 40.0 36.0 41.0 32.0 41.0 34 37.27057191915152 39.0 36.0 41.0 32.0 41.0 35 37.17689482260018 39.0 36.0 41.0 31.0 41.0 36 37.05463557697639 39.0 36.0 41.0 31.0 41.0 37 36.95388769595876 39.0 36.0 41.0 31.0 41.0 38 36.84146591905559 39.0 35.0 41.0 31.0 41.0 39 36.70942693048592 39.0 35.0 41.0 30.0 41.0 40 36.574155298530506 39.0 35.0 41.0 30.0 41.0 41 36.44735710430902 39.0 35.0 40.0 30.0 41.0 42 36.30648233456323 39.0 35.0 40.0 30.0 41.0 43 34.6554566534458 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 7.0 10 13.0 11 32.0 12 22.0 13 14.0 14 14.0 15 22.0 16 32.0 17 68.0 18 139.0 19 328.0 20 631.0 21 1305.0 22 2477.0 23 4511.0 24 7648.0 25 12206.0 26 18885.0 27 28065.0 28 41450.0 29 57299.0 30 75188.0 31 96277.0 32 121632.0 33 157327.0 34 211340.0 35 287048.0 36 423870.0 37 704103.0 38 1291517.0 39 1272403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.566000806084375 17.47759959616875 12.498336231042638 25.45806336670423 2 16.63839557230849 21.68352446171234 36.76998957406062 24.90809039191856 3 18.539878439485427 23.493622028653995 30.744000101331576 27.222499430529002 4 13.468544540107267 15.122284163224403 35.093118111711 36.316053184957326 5 14.48267012024611 37.294255890884166 34.37443221613194 13.848641772737777 6 34.73646418832058 35.82233169354757 15.16406267357964 14.277141444552214 7 29.253491526873738 30.98520247523139 21.756138502821816 18.005167495073064 8 27.53743713756571 35.950013632004 19.84730494346508 16.66524428696521 9 27.111055461803087 13.622888311215847 19.050959192653128 40.21509703432794 10 14.841255157683767 27.80690022349011 34.64584718077076 22.705997438055363 11 36.375336309740725 21.19229473036353 22.282398227694127 20.149970732201616 12 20.87015168381724 25.316780571248454 31.690453631148497 22.122614113785808 13 31.324725548202785 19.174010610329635 25.250354400957004 24.25090944051058 14 21.447450960604648 19.573460512766843 28.0843784709439 30.89471005568461 15 25.027528757506683 28.123042281222947 23.038294406850017 23.811134554420352 16 23.65483890459736 26.31009995487838 25.36260819170273 24.672452948821533 17 23.557784850223417 26.554624675526117 26.675122039140152 23.21246843511031 18 23.38651787536756 25.967981298510157 27.457057110932947 23.188443715189333 19 24.62760126772446 26.070953283028853 27.23134517874537 22.07010027050132 20 23.577054461361417 25.914865279877603 27.193304308481558 23.31477595027942 21 23.117034024775982 26.553129619489553 27.63496877928467 22.694867576449795 22 23.724068304957378 25.710914718888972 26.788621709916356 23.776395266237298 23 22.899129607446046 25.759254864071373 27.471675436623848 23.869940091858734 24 22.931979310916216 25.698975035263594 27.583970756703923 23.785074897116264 25 23.396090386935036 25.5513382516524 27.267351111626077 23.785220249786487 26 23.051417676504343 25.921323091368897 27.71784056597838 23.309418666148378 27 23.730006999769305 26.38630628340905 27.13657523776063 22.747111479061015 28 23.287781882952476 26.66534188090093 26.879363305469226 23.16751293067737 29 23.088731783417046 26.679295737242242 27.380290136388563 22.851682342952152 30 23.560588080291982 26.36286297416896 27.006629950582166 23.069918994956883 31 23.16597634530645 25.733880440784052 27.535879787527616 23.564263426381885 32 22.589756831212117 26.392535683561423 27.428090400224427 23.589617085002036 33 23.065184650841083 25.55179507433024 27.489491521059627 23.893528753769047 34 23.279974368094837 25.852861983694336 27.962780579969614 22.90438306824121 35 23.200445692816235 25.86060720455045 27.45352711751327 23.48541998512004 36 22.888684979857235 25.700656973304735 27.89510852964769 23.51554951719034 37 22.450405149803576 25.47342922041341 28.00173509558911 24.074430534193905 38 22.756351755953695 25.316344513237787 28.168226196994812 23.759077533813702 39 22.101621035272316 25.396620716534674 28.73350273148814 23.768255516704865 40 22.73637614613176 25.154566991280706 28.790252566876244 23.31880429571129 41 22.18488735064234 25.125849456578276 28.900596008241912 23.788667184537466 42 21.7749305266148 25.48345855465873 28.81317675943697 23.9284341592895 43 21.278821098479963 24.961600939227427 28.625069639502538 25.134508322790072 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 996.0 1 1465.5 2 1935.0 3 8026.5 4 14118.0 5 14118.0 6 16955.0 7 19792.0 8 17634.0 9 15476.0 10 18881.5 11 22287.0 12 22287.0 13 32314.0 14 42341.0 15 63604.5 16 84868.0 17 70778.0 18 56688.0 19 56688.0 20 57331.0 21 57974.0 22 47906.0 23 37838.0 24 42434.0 25 47030.0 26 47030.0 27 55784.5 28 64539.0 29 73848.0 30 83157.0 31 94618.5 32 106080.0 33 106080.0 34 121677.0 35 137274.0 36 156051.0 37 174828.0 38 197930.0 39 221032.0 40 221032.0 41 242091.0 42 263150.0 43 286005.5 44 308861.0 45 337233.0 46 365605.0 47 365605.0 48 387368.5 49 409132.0 50 416424.5 51 423717.0 52 418287.0 53 412857.0 54 412857.0 55 386417.5 56 359978.0 57 329398.0 58 298818.0 59 273607.5 60 248397.0 61 248397.0 62 216311.5 63 184226.0 64 155821.5 65 127417.0 66 105616.0 67 83815.0 68 83815.0 69 68763.0 70 53711.0 71 44297.5 72 34884.0 73 28417.0 74 21950.0 75 21950.0 76 17583.5 77 13217.0 78 10615.0 79 8013.0 80 6324.5 81 4636.0 82 4636.0 83 3741.0 84 2846.0 85 2150.5 86 1455.0 87 1037.0 88 619.0 89 619.0 90 400.5 91 182.0 92 133.0 93 84.0 94 62.0 95 40.0 96 40.0 97 24.5 98 9.0 99 5.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4815873.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.812474045993184 #Duplication Level Percentage of deduplicated Percentage of total 1 80.74935915730431 42.64573434725716 2 9.751995680498794 10.300540375459605 3 3.3481336708331795 5.304696677801796 4 1.663257108072955 3.5136289140766648 5 0.9989241592984425 2.637782811843228 6 0.6405271927900525 2.0296695446986512 7 0.4440493992093961 1.641594315961957 8 0.35028685108030744 1.4799612185065134 9 0.26045240158279737 1.2379622128927272 >10 1.6202930242980873 15.892898239807998 >50 0.1177411001248259 4.251752826139688 >100 0.050743987093480165 4.8101764023644655 >500 0.0029418533518325257 1.0519142566716784 >1k 0.0010590663776186774 0.9676842861226177 >5k 7.844936130487883E-5 0.3179625823148276 >10k+ 1.5689872260975766E-4 1.9160409880803537 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45041 0.9352613742098266 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 17993 0.3736186564720457 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17330 0.3598516821353055 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12129 0.25185464816036474 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7679 0.1594518792335263 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7670 0.15926499722895515 No Hit GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA 4977 0.103345748527837 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.0764667174570425E-5 0.0 6 0.0 0.0 0.0 2.0764667174570425E-5 0.0 7 0.0 0.0 0.0 2.0764667174570425E-5 0.0 8 0.0 0.0 0.0 2.0764667174570425E-5 2.0764667174570425E-5 9 0.0 0.0 0.0 4.152933434914085E-5 2.0764667174570425E-5 10 2.0764667174570425E-5 2.0764667174570425E-5 0.0 1.661173373965634E-4 2.0764667174570425E-5 11 2.0764667174570425E-5 2.0764667174570425E-5 0.0 4.360580106659789E-4 2.0764667174570425E-5 12 2.0764667174570425E-5 2.0764667174570425E-5 0.0 7.059986839353944E-4 2.0764667174570425E-5 13 2.0764667174570425E-5 2.0764667174570425E-5 0.0 8.098220198082466E-4 2.0764667174570425E-5 14 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.0010382333587285212 4.152933434914085E-5 15 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.0014950560365690707 8.30586686982817E-5 16 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.002201054720504465 8.30586686982817E-5 17 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.0033015820807566977 8.30586686982817E-5 18 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.003986816097517522 1.0382333587285213E-4 19 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.005087343457769755 1.0382333587285213E-4 20 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.007869808859162192 1.0382333587285213E-4 21 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.011981212959727136 1.0382333587285213E-4 22 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.01964337514714362 1.0382333587285213E-4 23 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.028987475375700313 1.2458800304742255E-4 24 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.04530850377491267 1.2458800304742255E-4 25 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.06086123948866592 1.2458800304742255E-4 26 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.07516809517194493 1.2458800304742255E-4 27 2.0764667174570425E-5 2.0764667174570425E-5 0.0 0.10035563645469887 1.2458800304742255E-4 28 4.152933434914085E-5 2.0764667174570425E-5 0.0 0.20806196508919567 1.2458800304742255E-4 29 4.152933434914085E-5 2.0764667174570425E-5 0.0 0.39448714698248893 1.2458800304742255E-4 30 4.152933434914085E-5 2.0764667174570425E-5 0.0 0.6345889935220468 1.2458800304742255E-4 31 4.152933434914085E-5 2.0764667174570425E-5 0.0 1.2176193184496351 1.2458800304742255E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGCT 100 5.885626E-6 16.650002 4 CTTATAC 6680 0.0 15.952096 37 TACTTAC 1755 0.0 14.757834 31 TCGTTAC 815 0.0 14.754601 23 GGAGTGT 1955 0.0 14.667519 6 GTACTAA 320 0.0 14.453125 1 TTAGTAC 325 0.0 14.23077 3 AGTGTAC 2225 0.0 14.2179785 27 TAGATCG 170 2.442357E-8 14.147059 5 AACGCAG 21290 0.0 13.7902775 5 CATTACG 745 0.0 13.409395 24 TATACAC 2890 0.0 13.378892 37 TAAGACT 820 0.0 13.310975 4 CTCGTTA 1015 0.0 13.305419 22 TAGACAG 870 0.0 13.1839075 5 ATTACGG 730 0.0 13.178082 25 GAGTGTC 1885 0.0 13.151194 7 ACAGCTA 2435 0.0 13.143738 19 CTACAGT 2475 0.0 12.931313 23 TAATACG 145 1.3740157E-5 12.75862 4 >>END_MODULE