##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727405.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4923011 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91666746225024 31.0 31.0 34.0 30.0 34.0 2 32.07773088461513 33.0 31.0 34.0 30.0 34.0 3 32.162095311182526 34.0 31.0 34.0 30.0 34.0 4 35.815662609732136 37.0 35.0 37.0 35.0 37.0 5 35.492390937172395 37.0 35.0 37.0 33.0 37.0 6 35.4907756655429 37.0 35.0 37.0 33.0 37.0 7 35.46520533876524 37.0 35.0 37.0 33.0 37.0 8 35.3974311656017 37.0 35.0 37.0 33.0 37.0 9 37.186291682062055 39.0 37.0 39.0 34.0 39.0 10 36.9468329443099 39.0 37.0 39.0 33.0 39.0 11 37.07271241116463 39.0 37.0 39.0 33.0 39.0 12 36.97985704277321 39.0 37.0 39.0 33.0 39.0 13 37.079696145306194 39.0 37.0 39.0 33.0 39.0 14 38.19492521954552 40.0 38.0 41.0 33.0 41.0 15 38.08347005521621 40.0 37.0 41.0 33.0 41.0 16 38.04942544308757 40.0 37.0 41.0 33.0 41.0 17 37.95843438091038 40.0 37.0 41.0 33.0 41.0 18 37.91755289598175 40.0 37.0 41.0 33.0 41.0 19 37.96431310025511 40.0 37.0 41.0 33.0 41.0 20 37.91607859498993 40.0 37.0 41.0 33.0 41.0 21 37.86528244604776 40.0 37.0 41.0 33.0 41.0 22 37.817722121685286 39.0 37.0 41.0 33.0 41.0 23 37.736989821879334 39.0 37.0 41.0 33.0 41.0 24 37.67818272191551 39.0 37.0 41.0 32.0 41.0 25 37.55807919177918 39.0 37.0 41.0 32.0 41.0 26 37.422568017824865 39.0 37.0 40.0 32.0 41.0 27 37.308794759954836 39.0 36.0 40.0 32.0 41.0 28 37.1978449773929 39.0 36.0 40.0 31.0 41.0 29 37.098555944725696 39.0 36.0 40.0 31.0 41.0 30 37.0114492939382 39.0 36.0 40.0 31.0 41.0 31 36.905734722104015 39.0 36.0 40.0 31.0 41.0 32 36.79784891807067 39.0 35.0 40.0 31.0 41.0 33 36.67659040371837 39.0 35.0 40.0 30.0 41.0 34 36.564309728334955 39.0 35.0 40.0 30.0 41.0 35 36.486708439205195 38.0 35.0 40.0 30.0 41.0 36 36.38182303472407 38.0 35.0 40.0 30.0 41.0 37 36.28568715365454 38.0 35.0 40.0 30.0 41.0 38 36.17967703098774 38.0 35.0 40.0 30.0 41.0 39 36.06043557489512 38.0 35.0 40.0 29.0 41.0 40 35.92212245717103 38.0 35.0 40.0 29.0 41.0 41 35.81026083427398 38.0 35.0 40.0 28.0 41.0 42 35.68056601945435 38.0 35.0 40.0 27.0 41.0 43 33.98725536059131 37.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 11.0 11 7.0 12 13.0 13 11.0 14 18.0 15 26.0 16 52.0 17 108.0 18 207.0 19 501.0 20 1070.0 21 2138.0 22 3959.0 23 6760.0 24 11384.0 25 17784.0 26 26812.0 27 38895.0 28 54898.0 29 74395.0 30 97270.0 31 123780.0 32 159213.0 33 206086.0 34 274175.0 35 376334.0 36 554265.0 37 873523.0 38 1329804.0 39 689506.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.28462804572242 18.575461237035626 12.754105160439414 25.38580555680253 2 16.966385002999182 21.561641848860383 36.521246854821165 24.950726293319274 3 18.480884970600307 23.230153253770915 30.968913130602388 27.320048645026386 4 13.717072742677194 15.55531767042568 35.65202271536667 35.07558687153045 5 14.349287458427373 37.23146261505408 34.74968875755102 13.669561168967528 6 34.56790976091664 36.595347847079765 15.000311801050211 13.836430590953382 7 29.3214863830286 31.300498820742025 21.54108532359566 17.83692947263372 8 27.30436718504184 36.08951919871802 19.66024451296168 16.94586910327846 9 26.58655444808066 13.783576758207527 19.10087139760606 40.52899739610576 10 14.701003105619712 27.8363993092845 34.95850405371834 22.504093531377446 11 36.430834706645996 21.216487227024274 22.474721263064414 19.877956803265317 12 20.81262869410611 25.46234408170122 31.677666371251252 22.047360852941424 13 31.12010109260369 19.32071652896977 25.316478065964105 24.242704312462436 14 21.536372760491496 19.628637839728572 27.65931256298229 31.175676836797646 15 24.79389138070177 28.35835629861481 22.76592516246663 24.08182715821679 16 24.05450647987583 26.427200751735064 25.036852446602293 24.48144032178681 17 23.598119118563822 26.913265072940117 26.53703190994292 22.95158389855314 18 23.530436962257447 25.988526127607674 27.16894193411309 23.31209497602179 19 24.37055289943492 26.19638672349097 27.02878380730817 22.40427656976594 20 23.769091720493822 26.16055499368171 26.853261144450013 23.217092141374458 21 23.491883321000095 26.438596216827463 26.852103316445973 23.21741714572647 22 23.944269066227967 25.933214449449736 26.487346869629175 23.635169614693122 23 23.34634230961499 25.793157886504826 26.754967640738563 24.10553216314162 24 23.389974143872518 26.02933448655711 26.78852434008374 23.79216702948663 25 23.751886802609214 25.62771035855902 26.766444356918967 23.853958481912795 26 23.367812909619744 25.94467085285814 27.1549870597486 23.53252917777352 27 23.85454755230082 26.358848273952667 26.630328471742192 23.156275702004322 28 23.673398251598464 26.309386674130934 26.809852750684488 23.207362323586114 29 23.436206012946144 26.50032673093763 26.86579412477445 23.197673131341777 30 23.44664677775451 26.47887644370488 26.734756432597855 23.33972034594276 31 23.446829592702514 25.728157016102543 26.93179032100477 23.893223070190174 32 22.924852290600203 26.30946792521894 26.96288917493786 23.802790609243 33 23.4521109134227 25.817309772413672 26.883872491855087 23.84670682230854 34 23.574251611462984 25.807194011957318 27.33861451863504 23.279939857944658 35 23.45469063546679 25.837053786798364 27.143997850096213 23.564257727638633 36 23.260622411771983 25.540934196571975 27.35630694304766 23.842136448608382 37 22.932022699116455 25.17079486517499 27.46132397429134 24.435858461417208 38 22.725868376081223 25.174776168487128 27.992238896073967 24.107116559357678 39 22.652214264806638 24.946663738919128 28.311454108065163 24.089667888209064 40 22.725218367377202 24.995333140632837 28.594837590247106 23.684610901742857 41 22.406856291810033 24.704921439338648 28.84381123665984 24.04441103219148 42 21.93015615849731 24.9828814113964 28.807695128042575 24.27926730206372 43 21.66680106950807 24.441830416385418 28.863088057288515 25.028280456817992 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 944.0 1 1120.0 2 1296.0 3 4640.5 4 7985.0 5 7985.0 6 10248.5 7 12512.0 8 11671.0 9 10830.0 10 13298.5 11 15767.0 12 15767.0 13 23619.5 14 31472.0 15 49213.5 16 66955.0 17 55624.5 18 44294.0 19 44294.0 20 47036.5 21 49779.0 22 43599.0 23 37419.0 24 43472.0 25 49525.0 26 49525.0 27 60098.5 28 70672.0 29 81204.5 30 91737.0 31 105788.5 32 119840.0 33 119840.0 34 138539.5 35 157239.0 36 179052.5 37 200866.0 38 225300.0 39 249734.0 40 249734.0 41 271846.5 42 293959.0 43 315804.0 44 337649.0 45 358311.0 46 378973.0 47 378973.0 48 395699.0 49 412425.0 50 417481.0 51 422537.0 52 417603.0 53 412669.0 54 412669.0 55 387051.0 56 361433.0 57 330937.0 58 300441.0 59 272606.0 60 244771.0 61 244771.0 62 214013.0 63 183255.0 64 154892.0 65 126529.0 66 106122.0 67 85715.0 68 85715.0 69 70182.5 70 54650.0 71 45883.0 72 37116.0 73 29770.5 74 22425.0 75 22425.0 76 17903.5 77 13382.0 78 10455.0 79 7528.0 80 5873.0 81 4218.0 82 4218.0 83 3333.5 84 2449.0 85 1848.5 86 1248.0 87 878.0 88 508.0 89 508.0 90 332.0 91 156.0 92 108.0 93 60.0 94 49.5 95 39.0 96 39.0 97 24.0 98 9.0 99 5.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4923011.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.273373315171895 #Duplication Level Percentage of deduplicated Percentage of total 1 81.46555896997808 45.02876253276748 2 9.594847342571795 10.606791581361113 3 3.2295018203105643 5.35516379208159 4 1.6092432463542305 3.557932108426261 5 0.9007543173584511 2.4893864824303242 6 0.6054333868847254 2.0078607366448993 7 0.41552155575455996 1.6077094650205963 8 0.3033474299307051 1.341362859100625 9 0.2464736436383405 1.2261086745455372 >10 1.4699634166351512 15.386359677004268 >50 0.1097763758300624 4.124280543580627 >100 0.047112945134561574 4.426271925369284 >500 0.001766364727083614 0.6523301767773114 >1k 5.519880724236436E-4 0.7053561330388022 >5k 3.67992048280322E-5 0.19022119372980473 >10k+ 1.1039761448409659E-4 1.2941021181214036 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36221 0.7357489146378101 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 13839 0.2811084517178613 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13563 0.2755021266456646 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9352 0.18996504375066398 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.031277200071257E-5 0.0 0.0 2.031277200071257E-5 0.0 7 2.031277200071257E-5 0.0 0.0 2.031277200071257E-5 0.0 8 2.031277200071257E-5 0.0 0.0 2.031277200071257E-5 0.0 9 2.031277200071257E-5 0.0 0.0 2.031277200071257E-5 0.0 10 2.031277200071257E-5 0.0 2.031277200071257E-5 2.031277200071257E-5 0.0 11 4.062554400142514E-5 0.0 2.031277200071257E-5 1.2187663200427543E-4 0.0 12 4.062554400142514E-5 0.0 2.031277200071257E-5 1.8281494800641315E-4 2.031277200071257E-5 13 4.062554400142514E-5 0.0 2.031277200071257E-5 2.234404920078383E-4 2.031277200071257E-5 14 8.125108800285029E-5 0.0 2.031277200071257E-5 2.4375326400855087E-4 2.031277200071257E-5 15 8.125108800285029E-5 0.0 2.031277200071257E-5 3.8594266801353887E-4 2.031277200071257E-5 16 8.125108800285029E-5 0.0 2.031277200071257E-5 6.500087040228023E-4 2.031277200071257E-5 17 8.125108800285029E-5 0.0 2.031277200071257E-5 8.937619680313532E-4 2.031277200071257E-5 18 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.0010562641440370537 8.125108800285029E-5 19 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.0014015812680491675 8.125108800285029E-5 20 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.002335968780081946 8.125108800285029E-5 21 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.0037781755921325383 1.0156386000356286E-4 22 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.006520399812228735 1.0156386000356286E-4 23 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.009221998488323507 2.234404920078383E-4 24 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.013629870012478135 2.234404920078383E-4 25 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.017428358376611386 2.234404920078383E-4 26 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.02147060000475319 2.4375326400855087E-4 27 8.125108800285029E-5 2.031277200071257E-5 2.031277200071257E-5 0.03562860208924985 2.4375326400855087E-4 28 1.0156386000356286E-4 2.031277200071257E-5 2.031277200071257E-5 0.11903284392417567 2.4375326400855087E-4 29 1.0156386000356286E-4 2.031277200071257E-5 2.031277200071257E-5 0.26136443733316866 2.4375326400855087E-4 30 1.0156386000356286E-4 4.062554400142514E-5 2.031277200071257E-5 0.4418637293315006 2.4375326400855087E-4 31 1.0156386000356286E-4 4.062554400142514E-5 2.031277200071257E-5 0.9767802671982655 2.640660360092634E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 5520 0.0 17.729168 37 CGTATAC 125 1.6608465E-7 16.28 3 AACGCAG 16380 0.0 14.253358 5 TATACTG 760 0.0 14.118422 5 GTACCGT 335 0.0 13.80597 6 TAGATCG 205 1.4279067E-9 13.536586 5 GTATTAG 730 0.0 13.431507 1 TTATACT 1085 0.0 12.958526 4 ACGCAGA 18430 0.0 12.788388 6 CGCAGAG 18785 0.0 12.586105 7 GTCTTAG 840 0.0 12.553571 1 TATACAC 2020 0.0 12.455446 37 AGAGTAC 19005 0.0 12.352802 10 GAGTACT 12440 0.0 12.328377 11 TACCGTG 425 0.0 12.188235 7 CAGAGTA 19585 0.0 12.109778 9 CTTACAC 980 0.0 12.081634 3 TAATACT 905 0.0 12.060773 4 TAGACAG 880 0.0 11.982954 5 TCTTATA 8265 0.0 11.9304285 37 >>END_MODULE