##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727356.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1017342 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17076460030157 33.0 31.0 34.0 30.0 34.0 2 32.316426531097704 34.0 31.0 34.0 30.0 34.0 3 32.391930147384066 34.0 31.0 34.0 30.0 34.0 4 35.96313727340462 37.0 35.0 37.0 35.0 37.0 5 35.85173619097609 37.0 35.0 37.0 35.0 37.0 6 35.867075182190455 37.0 35.0 37.0 35.0 37.0 7 35.81127388823031 37.0 35.0 37.0 35.0 37.0 8 35.78575936115878 37.0 35.0 37.0 35.0 37.0 9 37.52533169769851 39.0 37.0 39.0 35.0 39.0 10 37.36028100678041 39.0 37.0 39.0 34.0 39.0 11 37.46905858600156 39.0 37.0 39.0 35.0 39.0 12 37.37245390439007 39.0 37.0 39.0 34.0 39.0 13 37.4343023290103 39.0 37.0 39.0 35.0 39.0 14 38.60944107291353 40.0 38.0 41.0 34.0 41.0 15 38.57233555677442 40.0 38.0 41.0 34.0 41.0 16 38.51383703808552 40.0 38.0 41.0 34.0 41.0 17 38.46706122424907 40.0 38.0 41.0 34.0 41.0 18 38.41926018978869 40.0 38.0 41.0 34.0 41.0 19 38.437250206911735 40.0 38.0 41.0 34.0 41.0 20 38.31413428325971 40.0 38.0 41.0 34.0 41.0 21 38.24503559275052 40.0 38.0 41.0 34.0 41.0 22 38.16779509742053 40.0 38.0 41.0 34.0 41.0 23 38.05520758997466 40.0 38.0 41.0 33.0 41.0 24 37.937508723713364 40.0 37.0 41.0 33.0 41.0 25 37.86078821084748 40.0 37.0 41.0 33.0 41.0 26 37.50675780612616 40.0 37.0 41.0 32.0 41.0 27 37.28699001908896 39.0 37.0 41.0 31.0 41.0 28 37.13912037446601 39.0 36.0 41.0 31.0 41.0 29 37.09583109711385 39.0 36.0 40.0 31.0 41.0 30 37.014495617009814 39.0 36.0 40.0 31.0 41.0 31 36.815768935127025 39.0 36.0 40.0 30.0 41.0 32 36.71073346033094 39.0 36.0 40.0 30.0 41.0 33 36.517863216106285 39.0 36.0 40.0 30.0 41.0 34 36.38282111620281 39.0 35.0 40.0 30.0 41.0 35 36.23359892740101 39.0 35.0 40.0 29.0 41.0 36 36.085875742867195 39.0 35.0 40.0 29.0 41.0 37 35.859108343113725 38.0 35.0 40.0 27.0 41.0 38 35.7421309648083 38.0 35.0 40.0 27.0 41.0 39 35.57508979281304 38.0 35.0 40.0 26.0 41.0 40 35.43410180647216 38.0 34.0 40.0 26.0 41.0 41 35.290876617695915 38.0 34.0 40.0 25.0 41.0 42 35.088289876953866 38.0 34.0 40.0 24.0 41.0 43 31.68867794704239 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 3.0 12 0.0 13 5.0 14 8.0 15 20.0 16 21.0 17 47.0 18 103.0 19 212.0 20 403.0 21 822.0 22 1355.0 23 2362.0 24 3546.0 25 5133.0 26 7012.0 27 9450.0 28 12346.0 29 15777.0 30 19978.0 31 25095.0 32 31604.0 33 40135.0 34 51826.0 35 69031.0 36 96703.0 37 152005.0 38 273355.0 39 198982.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.245478904832396 18.918121929498636 12.67892213238026 26.157477033288707 2 18.81599304855201 21.29274128070993 34.20275580876441 25.688509861973653 3 18.79387659213912 22.021306502631365 30.763204507432114 28.421612397797396 4 14.743911093811127 15.840395855081182 33.30463108767749 36.11106196343019 5 14.560491948626911 36.95777821027737 34.19410581692292 14.287624024172796 6 36.39837930607406 35.250092889116935 14.07854978954963 14.27297801525937 7 30.00230011146694 30.79190675308795 20.16843893204055 19.037354203404558 8 28.345138606289723 34.66071389955393 18.599743252514887 18.394404241641453 9 26.787943484098758 13.588744001525544 18.18051353428837 41.442798980087325 10 15.6722124909814 27.98734348921012 33.68916254317624 22.651281476632242 11 37.51177086957975 20.93189900741344 20.96069954843111 20.595630574575708 12 21.60610689424009 25.360006762720893 29.940079147425347 23.093807195613667 13 31.976759044647718 19.672440536220858 23.514609639629544 24.83619077950188 14 22.486243564111184 20.238228638943443 25.771667738086112 31.503860058859264 15 25.61626277102489 28.245270518665304 21.497490519412352 24.640976190897458 16 25.10758427352847 26.065177688525587 23.751206575566524 25.076031462379415 17 24.415879812295177 26.33873368051255 25.159385929215546 24.086000577976726 18 24.45460818485819 25.442968048109684 25.579795191784083 24.52262857524805 19 25.52042479323571 25.20519156783068 25.69932235177551 23.575061287158103 20 25.019413333962426 25.395196502257843 25.44080555014931 24.14458461363042 21 24.817219774667713 25.311448853974376 25.522390700472407 24.348940670885504 22 25.20951656375142 25.126162096915294 25.175997845365668 24.488323493967616 23 24.874034493808374 25.029734346955106 25.308499993119327 24.787731166117197 24 24.76020846480338 25.11967460303418 25.254142658024538 24.8659742741379 25 24.927113989199306 24.79824876983355 25.38910218982407 24.885535051143076 26 24.609030198301063 25.076424643826755 25.588052002178223 24.726493155693955 27 24.804637968352825 25.330321563446706 25.342608483676088 24.522431984524378 28 24.845332248152538 25.32963349591386 25.412496485940817 24.412537769992785 29 24.61826996231356 25.61272413799883 25.295525005357096 24.47348089433052 30 24.681178993887993 25.552862262641273 25.275276160819075 24.490682582651655 31 24.570006939652544 24.764435165362286 25.60987357250561 25.05568432247956 32 24.31483218032874 25.32717611186798 25.479239036626815 24.878752671176457 33 24.54386037340442 24.94018727232337 25.45889189672696 25.057060457545248 34 24.557425133337656 24.81210841585229 25.831234727358154 24.799231723451896 35 24.604410316294814 24.73612610115379 25.925008502548796 24.734455080002597 36 24.289177090889787 24.427970141800888 26.22461276542205 25.05824000188727 37 24.13003690007883 24.16453857208294 26.427985869058784 25.277438658779445 38 23.78128495628805 24.079119902648273 26.953767759514502 25.185827381549174 39 23.567984021105982 23.84576671365185 27.368279300372933 25.217969964869237 40 23.700682759583305 23.68574186458438 27.628270532426658 24.985304843405657 41 23.25913999422023 23.62008056287856 28.051530360488407 25.0692490824128 42 22.919332928356443 23.87161839381447 27.858085088397015 25.35096358943207 43 23.103145254987997 23.098230486896245 27.82604080043879 25.97258345767697 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 115.0 1 132.5 2 150.0 3 300.0 4 450.0 5 450.0 6 543.5 7 637.0 8 673.5 9 710.0 10 1088.5 11 1467.0 12 1467.0 13 2689.0 14 3911.0 15 6322.0 16 8733.0 17 6813.0 18 4893.0 19 4893.0 20 5852.5 21 6812.0 22 6483.0 23 6154.0 24 7371.0 25 8588.0 26 8588.0 27 10435.0 28 12282.0 29 14287.0 30 16292.0 31 19033.5 32 21775.0 33 21775.0 34 25221.0 35 28667.0 36 32581.5 37 36496.0 38 40930.5 39 45365.0 40 45365.0 41 50346.5 42 55328.0 43 60234.5 44 65141.0 45 70486.5 46 75832.0 47 75832.0 48 80225.5 49 84619.0 50 87194.0 51 89769.0 52 89244.5 53 88720.0 54 88720.0 55 85472.0 56 82224.0 57 77528.0 58 72832.0 59 66689.0 60 60546.0 61 60546.0 62 53550.0 63 46554.0 64 39726.5 65 32899.0 66 27324.5 67 21750.0 68 21750.0 69 17574.0 70 13398.0 71 10987.5 72 8577.0 73 7092.5 74 5608.0 75 5608.0 76 4613.0 77 3618.0 78 3060.0 79 2502.0 80 2033.0 81 1564.0 82 1564.0 83 1258.0 84 952.0 85 784.0 86 616.0 87 510.5 88 405.0 89 405.0 90 319.5 91 234.0 92 165.5 93 97.0 94 71.0 95 45.0 96 45.0 97 29.0 98 13.0 99 7.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1017342.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.53201839431884 #Duplication Level Percentage of deduplicated Percentage of total 1 89.15080137198775 70.01192373213208 2 6.741747197894825 10.588860299098478 3 1.8676610206854998 4.40013568892478 4 0.7765974284019322 2.4395105412896503 5 0.42603989491783467 1.6728886432200527 6 0.2571315335157088 1.2115834991889032 7 0.17231637771117256 0.9472647060839338 8 0.12155341281279912 0.7636667880725577 9 0.08261729307972206 0.5839292501843008 >10 0.38496197498733276 5.0220129051699685 >50 0.013682075296788502 0.7317069603477 >100 0.00438883848024591 0.5362972798294214 >500 0.0 0.0 >1k 3.7618517128504335E-4 0.5449621403251449 >5k 1.2539505709501447E-4 0.5452575661330551 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 5537 0.5442614184807076 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 2209 0.21713445429363973 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1854 0.18223960084219465 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 1471 0.14459247725936802 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 9.829536183505644E-5 0.0 6 0.0 0.0 0.0 9.829536183505644E-5 0.0 7 0.0 0.0 0.0 9.829536183505644E-5 0.0 8 0.0 0.0 0.0 9.829536183505644E-5 0.0 9 0.0 0.0 0.0 9.829536183505644E-5 0.0 10 9.829536183505644E-5 0.0 0.0 9.829536183505644E-5 0.0 11 9.829536183505644E-5 0.0 0.0 1.965907236701129E-4 0.0 12 9.829536183505644E-5 0.0 0.0 1.965907236701129E-4 9.829536183505644E-5 13 9.829536183505644E-5 0.0 0.0 1.965907236701129E-4 1.965907236701129E-4 14 9.829536183505644E-5 0.0 0.0 4.914768091752822E-4 1.965907236701129E-4 15 9.829536183505644E-5 0.0 0.0 4.914768091752822E-4 2.9488608550516936E-4 16 9.829536183505644E-5 0.0 0.0 5.897721710103387E-4 2.9488608550516936E-4 17 9.829536183505644E-5 0.0 0.0 6.880675328453952E-4 2.9488608550516936E-4 18 9.829536183505644E-5 0.0 0.0 6.880675328453952E-4 3.931814473402258E-4 19 9.829536183505644E-5 0.0 0.0 8.84658256515508E-4 3.931814473402258E-4 20 9.829536183505644E-5 0.0 0.0 0.001081248980185621 3.931814473402258E-4 21 9.829536183505644E-5 0.0 0.0 0.0015727257893609031 3.931814473402258E-4 22 9.829536183505644E-5 0.0 0.0 0.0027522701313815808 3.931814473402258E-4 23 9.829536183505644E-5 0.0 0.0 0.0031454515787218062 3.931814473402258E-4 24 1.965907236701129E-4 0.0 0.0 0.003931814473402258 3.931814473402258E-4 25 1.965907236701129E-4 0.0 0.0 0.00471817736808271 3.931814473402258E-4 26 1.965907236701129E-4 0.0 0.0 0.005799426348268331 3.931814473402258E-4 27 1.965907236701129E-4 0.0 0.0 0.010222717630845871 3.931814473402258E-4 28 1.965907236701129E-4 0.0 0.0 0.034698262727774924 3.931814473402258E-4 29 1.965907236701129E-4 0.0 0.0 0.09043173288825193 3.931814473402258E-4 30 1.965907236701129E-4 0.0 0.0 0.16307200528435864 3.931814473402258E-4 31 1.965907236701129E-4 0.0 0.0 0.45540241138181653 3.931814473402258E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTTAG 35 8.868692E-4 26.42857 29 TCGTAAT 50 0.0070343413 18.499998 2 ACTATAC 85 2.722617E-5 17.411764 3 GTATAGT 65 0.0015797657 17.076921 1 TATAGAG 100 5.8764563E-6 16.65 2 GTACTAG 80 3.3820877E-4 16.1875 1 AACGCAG 2465 0.0 15.835701 5 TTAGAAC 120 1.93487E-6 15.416667 3 CTAACAC 120 1.93487E-6 15.416667 3 TAGACAG 195 4.1836756E-11 15.179487 5 CTTATAC 540 0.0 15.074075 37 GAGTACT 1705 0.0 14.865103 11 GGTATCA 1485 0.0 14.824916 1 TATACTG 150 8.096504E-8 14.8 5 CTCTTAT 1520 0.0 14.726974 37 TCTTATA 920 0.0 14.679348 37 AGTACTT 1770 0.0 14.528248 12 GTGTTAC 90 8.2728633E-4 14.388888 1 CTACTCG 90 8.2728633E-4 14.388888 14 GTATAAG 180 3.3269316E-9 14.388888 1 >>END_MODULE