##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727302.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9170149 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06508127621481 33.0 31.0 34.0 30.0 34.0 2 32.21302227477438 33.0 31.0 34.0 30.0 34.0 3 32.29565070316742 34.0 31.0 34.0 30.0 34.0 4 35.890940921461585 37.0 35.0 37.0 35.0 37.0 5 35.76382826494967 37.0 35.0 37.0 35.0 37.0 6 35.77779946650812 37.0 35.0 37.0 35.0 37.0 7 35.71996518268133 37.0 35.0 37.0 33.0 37.0 8 35.683429026071444 37.0 35.0 37.0 33.0 37.0 9 37.40711094225404 39.0 37.0 39.0 35.0 39.0 10 37.23182524078943 39.0 37.0 39.0 34.0 39.0 11 37.34342408176792 39.0 37.0 39.0 34.0 39.0 12 37.23979414074951 39.0 37.0 39.0 34.0 39.0 13 37.29633586106398 39.0 37.0 39.0 34.0 39.0 14 38.44425046964886 40.0 38.0 41.0 34.0 41.0 15 38.40093863251295 40.0 38.0 41.0 34.0 41.0 16 38.319836242573594 40.0 38.0 41.0 34.0 41.0 17 38.27032406997967 40.0 38.0 41.0 33.0 41.0 18 38.21513009221551 40.0 38.0 41.0 33.0 41.0 19 38.21318159606785 40.0 38.0 41.0 34.0 41.0 20 38.08867991130788 40.0 38.0 41.0 33.0 41.0 21 38.0049591342518 40.0 37.0 41.0 33.0 41.0 22 37.923233853670204 40.0 37.0 41.0 33.0 41.0 23 37.8022769313781 40.0 37.0 41.0 33.0 41.0 24 37.67980945565879 40.0 37.0 41.0 32.0 41.0 25 37.58682568843756 39.0 37.0 41.0 32.0 41.0 26 37.202590710358145 39.0 37.0 41.0 31.0 41.0 27 36.972138402549405 39.0 36.0 40.0 31.0 41.0 28 36.80347854762229 39.0 36.0 40.0 30.0 41.0 29 36.74557229113726 39.0 36.0 40.0 30.0 41.0 30 36.66232042685457 39.0 36.0 40.0 30.0 41.0 31 36.44337425705951 39.0 36.0 40.0 30.0 41.0 32 36.32802051526098 39.0 35.0 40.0 30.0 41.0 33 36.14069705955705 39.0 35.0 40.0 29.0 41.0 34 35.98463536415821 38.0 35.0 40.0 28.0 41.0 35 35.81804755844207 38.0 35.0 40.0 27.0 41.0 36 35.65552937035156 38.0 35.0 40.0 26.0 41.0 37 35.409314396091055 38.0 34.0 40.0 25.0 41.0 38 35.289906412643894 38.0 34.0 40.0 25.0 41.0 39 35.11918148767266 38.0 34.0 40.0 24.0 41.0 40 34.97383597583856 38.0 34.0 40.0 24.0 41.0 41 34.83260948104551 38.0 33.0 40.0 24.0 41.0 42 34.63069040644814 38.0 33.0 40.0 23.0 41.0 43 31.102343157128637 35.0 27.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 6.0 10 29.0 11 41.0 12 40.0 13 41.0 14 73.0 15 143.0 16 328.0 17 646.0 18 1315.0 19 2607.0 20 5086.0 21 9778.0 22 17399.0 23 27411.0 24 40901.0 25 57504.0 26 77737.0 27 101125.0 28 129817.0 29 163657.0 30 203832.0 31 252080.0 32 312595.0 33 388291.0 34 495859.0 35 645456.0 36 897758.0 37 1386551.0 38 2412854.0 39 1539188.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.09565744242542 17.862806809355007 12.181067068812077 26.8604686794075 2 19.087072630989965 20.719052656614412 33.833855916626874 26.360018795768745 3 18.941077184242044 21.44771039161959 30.08188852765642 29.529323896481944 4 15.079242441971227 15.112993256707169 32.66726636611902 37.14049793520258 5 15.01180624218865 36.612218623710476 33.64588732418633 14.730087809914538 6 37.70964899261724 34.39164401799796 13.412213912772847 14.48649307661195 7 31.434963597647105 30.368961289505762 19.20629642986172 18.98977868298541 8 29.097836905376344 34.4944994895939 18.03152816819007 18.376135436839686 9 27.725394647349788 13.23745121262479 16.950706035419927 42.086448104605495 10 15.949849887935299 27.208881774985333 32.868320896421636 23.972947440657723 11 38.615043223398004 20.366288486697435 20.070415431635844 20.948252858268717 12 22.548673963749117 24.313781597223773 28.786086245708763 24.351458193318344 13 33.000499773776845 18.539229842394057 22.67588018471674 25.784390199112362 14 23.28494335261074 19.169481324676404 24.44320152267973 33.10237380003313 15 27.017096450668358 26.899181245582817 20.485196042070854 25.59852626167797 16 26.222649163061583 25.069799847308914 22.830185202007076 25.877365787622423 17 25.64227691393019 25.407242564979043 23.880135426370934 25.070345094719837 18 25.609420304948156 24.478795273664584 24.470812851568716 25.44097156981855 19 26.577081790055974 24.829345739093224 24.083087417663553 24.51048505318725 20 26.07988158098631 24.466003769404402 23.997407239511592 25.4567074100977 21 25.870506575193055 24.880860714476942 23.828838549951588 25.419794160378416 22 26.51750805793886 24.364925804368063 23.221629223254713 25.895936914438362 23 25.9671462263045 24.224099303075665 23.563521159797947 26.245233310821884 24 25.775295472298215 24.09978289338592 23.693540857405914 26.43138077690995 25 26.107798248425407 23.78774870506466 23.747596685724517 26.356856360785414 26 25.745775777471007 24.06036150557641 24.12368653988065 26.07017617707193 27 26.30882006388337 24.468620956976817 23.73826205004957 25.484296929090245 28 26.12805964221519 24.589862171268972 23.61248437729856 25.66959380921728 29 25.7250236610114 24.809695022403673 24.006163912930965 25.459117403653963 30 25.980581122509566 24.684582551493982 23.691567061778386 25.64326926421806 31 25.83197939313745 24.08148439027545 23.78422640679012 26.30230980979698 32 25.334757374171346 24.525403022350016 23.8833741959918 26.256465407486836 33 25.73111952706548 24.064559910640494 23.883112477234558 26.321208085059467 34 25.854247297399418 24.057090021110888 24.39729169068027 25.69137099080942 35 25.714478576084204 24.07678435759332 24.337870627838218 25.870866438484256 36 25.418736380401235 23.64094629214858 24.70932587900153 26.230991448448655 37 25.041806845232284 23.35460416182987 24.99382507307133 26.609763919866513 38 24.902692420810173 23.248466300820194 25.449521049221772 26.39932022914786 39 24.671572948269436 23.02273387269934 25.92615452595154 26.37953865307968 40 24.946879270991126 22.787383280249863 26.406364825696944 25.859372623062065 41 24.39143573348699 22.719260068729525 26.691278407799047 26.198025789984435 42 23.960428560103004 22.741833311541612 26.972527927299762 26.325210201055622 43 23.963361991173755 21.780496696400462 26.93091464489836 27.32522666752743 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 213.0 1 293.5 2 374.0 3 1217.0 4 2060.0 5 2060.0 6 2454.5 7 2849.0 8 2847.5 9 2846.0 10 4091.5 11 5337.0 12 5337.0 13 11757.5 14 18178.0 15 32530.5 16 46883.0 17 34603.0 18 22323.0 19 22323.0 20 26967.0 21 31611.0 22 27883.5 23 24156.0 24 31398.0 25 38640.0 26 38640.0 27 50108.0 28 61576.0 29 75327.0 30 89078.0 31 109085.5 32 129093.0 33 129093.0 34 154666.0 35 180239.0 36 215993.0 37 251747.0 38 299502.5 39 347258.0 40 347258.0 41 398712.0 42 450166.0 43 505583.5 44 561001.0 45 623144.5 46 685288.0 47 685288.0 48 749650.0 49 814012.0 50 851259.5 51 888507.0 52 900003.5 53 911500.0 54 911500.0 55 862772.0 56 814044.0 57 761722.5 58 709401.0 59 658392.5 60 607384.0 61 607384.0 62 536210.5 63 465037.0 64 398294.5 65 331552.0 66 280206.0 67 228860.0 68 228860.0 69 190931.0 70 153002.0 71 128997.5 72 104993.0 73 86772.0 74 68551.0 75 68551.0 76 57114.5 77 45678.0 78 38377.0 79 31076.0 80 24923.5 81 18771.0 82 18771.0 83 15122.5 84 11474.0 85 9162.5 86 6851.0 87 5728.5 88 4606.0 89 4606.0 90 3404.0 91 2202.0 92 1613.5 93 1025.0 94 769.0 95 513.0 96 513.0 97 327.0 98 141.0 99 97.0 100 53.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 9170149.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.049375569797874 #Duplication Level Percentage of deduplicated Percentage of total 1 80.59053342484377 43.55868008449729 2 9.940996394168831 10.74609295292875 3 3.501277716014848 5.677256227411518 4 1.6509044520754073 3.569214190403002 5 0.9737741972162209 2.631594365275897 6 0.6340189275788015 2.056099628104027 7 0.43041046741987615 1.6284391901924395 8 0.32657893652102166 1.4121110074567902 9 0.23270901530964522 1.1319999270253969 >10 1.5316664100836095 15.619888721302603 >50 0.1292614703521038 4.8097980929522315 >100 0.05526532794283703 5.082678010677482 >500 0.0017964694519449857 0.6383858966577257 >1k 6.656027064448271E-4 0.6197470767656735 >5k 1.2101855550978415E-4 0.472062335902521 >10k+ 2.0169759251630692E-5 0.3459522924467831 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 31734 0.3460576267626622 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 9241 0.10077262648622176 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1809896436797264E-5 2 0.0 1.0904948218398632E-5 0.0 0.0 2.1809896436797264E-5 3 0.0 1.0904948218398632E-5 0.0 0.0 2.1809896436797264E-5 4 0.0 1.0904948218398632E-5 0.0 0.0 2.1809896436797264E-5 5 0.0 1.0904948218398632E-5 0.0 0.0 2.1809896436797264E-5 6 1.0904948218398632E-5 1.0904948218398632E-5 0.0 0.0 5.452474109199316E-5 7 1.0904948218398632E-5 1.0904948218398632E-5 0.0 0.0 6.542968931039179E-5 8 1.0904948218398632E-5 1.0904948218398632E-5 0.0 0.0 8.723958574718906E-5 9 1.0904948218398632E-5 1.0904948218398632E-5 0.0 0.0 1.7447917149437811E-4 10 3.2714844655195896E-5 1.0904948218398632E-5 0.0 0.0 1.8538411971277675E-4 11 5.452474109199316E-5 1.0904948218398632E-5 0.0 0.0 2.07194016149574E-4 12 5.452474109199316E-5 1.0904948218398632E-5 0.0 1.0904948218398632E-5 2.2900391258637127E-4 13 5.452474109199316E-5 1.0904948218398632E-5 0.0 2.1809896436797264E-5 2.2900391258637127E-4 14 6.542968931039179E-5 1.0904948218398632E-5 0.0 7.633463752879042E-5 3.2714844655195896E-4 15 6.542968931039179E-5 1.0904948218398632E-5 0.0 1.1995443040238495E-4 3.4895834298875623E-4 16 8.723958574718906E-5 1.0904948218398632E-5 0.0 2.5081380902316857E-4 4.252929805175467E-4 17 8.723958574718906E-5 1.0904948218398632E-5 0.0 4.14388032299148E-4 4.252929805175467E-4 18 8.723958574718906E-5 1.0904948218398632E-5 0.0 5.234375144831343E-4 4.689127733911412E-4 19 8.723958574718906E-5 1.0904948218398632E-5 0.0 8.396810128166946E-4 4.689127733911412E-4 20 8.723958574718906E-5 2.1809896436797264E-5 0.0 0.0012976888379894374 4.907226698279384E-4 21 1.1995443040238495E-4 2.1809896436797264E-5 0.0 0.0023881836598293005 5.125325662647357E-4 22 1.3085937862078359E-4 2.1809896436797264E-5 0.0 0.0037294922906923322 5.125325662647357E-4 23 1.4176432683918222E-4 2.1809896436797264E-5 0.0 0.004765462371440202 6.542968931039179E-4 24 1.4176432683918222E-4 2.1809896436797264E-5 0.0 0.006477539241728787 6.542968931039179E-4 25 1.4176432683918222E-4 2.1809896436797264E-5 0.0 0.00765527364931584 6.652018413223165E-4 26 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.009269205985638837 6.761067895407152E-4 27 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.013871094133803061 6.761067895407152E-4 28 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.03816731876439521 6.761067895407152E-4 29 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.0948403346554129 6.870117377591138E-4 30 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.1745991259247805 6.870117377591138E-4 31 1.5266927505758085E-4 2.1809896436797264E-5 0.0 0.4782474090660904 6.870117377591138E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 5245 0.0 19.081982 37 TCTTATA 9180 0.0 15.779412 37 GAGTACT 9145 0.0 15.050848 11 AGTACTT 9555 0.0 14.346939 12 GTACTTT 9755 0.0 14.014863 13 GTATAGA 780 0.0 13.99359 1 TATACCG 440 0.0 13.875 5 TACTTTT 10115 0.0 13.607513 14 TATACTA 450 0.0 13.155556 5 CTCTTAT 14515 0.0 13.038581 37 TAAGACT 1235 0.0 12.882591 4 ACTTTTT 10845 0.0 12.776855 15 TAATACT 990 0.0 12.707071 4 GTCTTAG 1360 0.0 12.650735 1 AACGCAG 23345 0.0 12.148425 5 TATACTG 985 0.0 12.020304 5 TTAGACA 1595 0.0 11.83072 4 CTAAGAC 1410 0.0 11.808511 3 GGACCGT 800 0.0 11.793751 6 CTTAGAC 1605 0.0 11.757009 3 >>END_MODULE