##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727297.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5803084 Sequences flagged as poor quality 0 Sequence length 43 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.948563384572754 33.0 31.0 34.0 30.0 34.0 2 32.10034095663616 33.0 31.0 34.0 30.0 34.0 3 32.18040872749731 34.0 31.0 34.0 30.0 34.0 4 35.80514964112186 37.0 35.0 37.0 35.0 37.0 5 35.65356403595054 37.0 35.0 37.0 33.0 37.0 6 35.67346104243882 37.0 35.0 37.0 33.0 37.0 7 35.6147979246897 37.0 35.0 37.0 33.0 37.0 8 35.57948290943229 37.0 35.0 37.0 33.0 37.0 9 37.285808890583006 39.0 37.0 39.0 34.0 39.0 10 37.09911419514176 39.0 37.0 39.0 33.0 39.0 11 37.21629619698767 39.0 37.0 39.0 34.0 39.0 12 37.115553902028644 39.0 37.0 39.0 33.0 39.0 13 37.17304419512108 39.0 37.0 39.0 34.0 39.0 14 38.280299750960005 40.0 38.0 41.0 34.0 41.0 15 38.234754485718284 40.0 38.0 41.0 33.0 41.0 16 38.148314068864074 40.0 38.0 41.0 33.0 41.0 17 38.09726879707411 40.0 37.0 41.0 33.0 41.0 18 38.054311466110086 40.0 37.0 41.0 33.0 41.0 19 38.06227447336623 40.0 37.0 41.0 33.0 41.0 20 37.944280144833336 40.0 37.0 41.0 33.0 41.0 21 37.85641910404881 40.0 37.0 41.0 33.0 41.0 22 37.78166695501909 40.0 37.0 41.0 33.0 41.0 23 37.65388489982223 39.0 37.0 41.0 32.0 41.0 24 37.54221186527715 39.0 37.0 41.0 32.0 41.0 25 37.450161328011106 39.0 37.0 41.0 32.0 41.0 26 37.07060780095549 39.0 36.0 40.0 31.0 41.0 27 36.83453022565243 39.0 36.0 40.0 30.0 41.0 28 36.66325388362464 39.0 36.0 40.0 30.0 41.0 29 36.607161467936706 39.0 36.0 40.0 30.0 41.0 30 36.51458603735531 39.0 36.0 40.0 30.0 41.0 31 36.305925263187646 39.0 35.0 40.0 30.0 41.0 32 36.18529371623778 38.0 35.0 40.0 29.0 41.0 33 35.99981147955122 38.0 35.0 40.0 28.0 41.0 34 35.84112482259433 38.0 35.0 40.0 27.0 41.0 35 35.67538484709165 38.0 35.0 40.0 27.0 41.0 36 35.50573901739144 38.0 34.0 40.0 26.0 41.0 37 35.259348822109075 38.0 34.0 40.0 25.0 41.0 38 35.14544421552402 38.0 34.0 40.0 25.0 41.0 39 34.97207588241011 38.0 34.0 40.0 24.0 41.0 40 34.82223590077276 38.0 33.0 40.0 24.0 41.0 41 34.67708756240647 38.0 33.0 40.0 24.0 41.0 42 34.46215184891344 38.0 33.0 40.0 23.0 41.0 43 31.06498785818024 35.0 27.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 17.0 11 20.0 12 17.0 13 22.0 14 51.0 15 101.0 16 206.0 17 393.0 18 883.0 19 1808.0 20 3597.0 21 6553.0 22 11371.0 23 17853.0 24 27086.0 25 37966.0 26 50622.0 27 66141.0 28 85353.0 29 108322.0 30 135421.0 31 165552.0 32 205316.0 33 256621.0 34 327150.0 35 430341.0 36 599193.0 37 934225.0 38 1547418.0 39 783462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.30252396828996 18.686718992866552 12.815375410729882 26.1953816281136 2 18.970361276865887 21.40765151771024 33.915294005739014 25.706693199684853 3 19.237650187383124 22.262834727189887 30.241161423822227 28.25835366160476 4 15.351974915407048 15.46510441689281 32.61676032950755 36.56616033819259 5 15.032817033149959 36.71365087942894 33.500204374087986 14.753327713333118 6 37.16766808820965 34.553747627985395 13.538266893948114 14.740317389856841 7 30.424322653265058 30.453479563625134 19.875483449834604 19.246714333275204 8 28.543443451792182 34.81092122740253 18.47109226749087 18.17454305331441 9 27.185424164116874 13.630907289985808 17.609395280164822 41.5742732657325 10 15.955688389139292 27.521073277588258 33.23012384449372 23.293114488778723 11 37.692337384742316 20.87369405647066 20.138791718334595 21.29517684045242 12 21.961753440067387 24.932036138025918 29.185257356260912 23.920953065645783 13 32.8139313509851 19.030984214600373 22.969786410122616 25.185298024291914 14 22.856691373069907 19.81954767499488 25.18242024413226 32.141340707802954 15 26.925217694591357 27.362330098961174 20.97455421979072 24.73789798665675 16 25.599353722951452 25.430719252039086 23.607430118192326 25.362496906817135 17 25.013337735590248 25.91142916421682 24.712049661869447 24.363183438323485 18 24.993761937617997 25.072271916105297 25.227672044726564 24.706294101550142 19 25.800057348816598 25.43326962008477 24.917405986196307 23.84926704490233 20 25.295291262370146 24.956626511006906 24.81342679168525 24.9346554349377 21 24.95990063214663 25.574022364659893 24.640467034425143 24.82560996876833 22 25.70157523137697 24.930175058641233 23.90951087387327 25.458738836108523 23 25.20177202328969 24.71597860723712 24.215193162807914 25.867056206665286 24 25.122452130625717 24.852457762114074 24.361770396568446 25.663319710691763 25 25.51476077203087 24.288188832007258 24.268871517282882 25.92817887867899 26 25.044700369665506 24.694955303076778 24.987179230905497 25.27316509635222 27 25.969019231842932 24.916372053204814 24.39418419585172 24.720424519100533 28 25.334718573779046 25.239993079541843 24.43090604926622 24.994382297412894 29 25.21066384701652 25.196430036166976 24.856266081966073 24.736640034850435 30 25.242543447587522 25.087298408914982 24.683047841458094 24.987110302039397 31 25.257725030345934 24.494561857109083 24.59004556887338 25.657667543671607 32 24.775619308629686 24.839344045338652 24.541416253840197 25.843620392191465 33 25.263273804066944 24.58155008612662 24.433129005197927 25.722047104608514 34 25.59063422138987 24.49116711045368 24.85059668272939 25.067601985427057 35 25.17132269669024 24.649893056864247 24.970532909742474 25.208251336703036 36 24.94633887774156 24.349311504020964 25.188572145431635 25.51577747280584 37 24.48215466121118 23.98517753663397 25.643106320708092 25.88956148144676 38 24.501058402738956 23.84466604309019 26.001191780094864 25.65308377407599 39 24.053554971804648 23.684647680440264 26.412886665090497 25.848910682664595 40 24.574950147197594 23.472346772853882 26.831956938758772 25.120746141189755 41 24.22353355560595 23.308468393702384 26.97077967508311 25.497218375608554 42 23.64325589634753 23.507569423430713 27.20084699790663 25.648327682315124 43 24.006045750845583 22.658469186384345 26.98544429134577 26.3500407714243 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 478.0 1 515.5 2 553.0 3 1233.0 4 1913.0 5 1913.0 6 2284.0 7 2655.0 8 2817.0 9 2979.0 10 4202.5 11 5426.0 12 5426.0 13 11192.0 14 16958.0 15 29163.0 16 41368.0 17 30643.5 18 19919.0 19 19919.0 20 24510.5 21 29102.0 22 26440.5 23 23779.0 24 29834.5 25 35890.0 26 35890.0 27 45306.5 28 54723.0 29 64900.5 30 75078.0 31 89569.0 32 104060.0 33 104060.0 34 121689.5 35 139319.0 36 162590.0 37 185861.0 38 214408.5 39 242956.0 40 242956.0 41 272151.5 42 301347.0 43 332691.0 44 364035.0 45 397570.0 46 431105.0 47 431105.0 48 468009.0 49 504913.0 50 524906.5 51 544900.0 52 553411.0 53 561922.0 54 561922.0 55 530403.0 56 498884.0 57 453961.5 58 409039.0 59 378727.0 60 348415.0 61 348415.0 62 307680.5 63 266946.0 64 228043.0 65 189140.0 66 160368.5 67 131597.0 68 131597.0 69 109904.0 70 88211.0 71 75206.0 72 62201.0 73 51847.0 74 41493.0 75 41493.0 76 34884.0 77 28275.0 78 23562.5 79 18850.0 80 15323.0 81 11796.0 82 11796.0 83 9499.5 84 7203.0 85 5830.0 86 4457.0 87 3660.0 88 2863.0 89 2863.0 90 2137.0 91 1411.0 92 1016.5 93 622.0 94 462.5 95 303.0 96 303.0 97 203.5 98 104.0 99 69.5 100 35.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5803084.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.43175487637063 #Duplication Level Percentage of deduplicated Percentage of total 1 81.38768693123197 45.114623119268444 2 9.608305363781213 10.652104554048746 3 3.279802980297422 5.454157045399097 4 1.5852436051730427 3.5149133976514473 5 0.910079034894082 2.5223638990186354 6 0.5889623781423724 1.9588330905955373 7 0.40438297179149774 1.5690960437967219 8 0.30974995930872523 1.3735987053893628 9 0.2382514178460055 1.188602477368878 >10 1.5330979280706096 15.9049373231866 >50 0.11176095411364459 4.22488727725118 >100 0.040035457800636096 3.7939953492709613 >500 0.001553544314807216 0.6282300552713467 >1k 9.01049251132892E-4 1.0098886613441642 >5k 1.5535331912776211E-4 0.6268660482101557 >10k+ 3.107066382555243E-5 0.46290295292865763 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 26877 0.46315028353889076 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 8327 0.14349266700258 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8141 0.14028747472895448 No Hit GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG 7561 0.13029278914453074 No Hit GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 6345 0.10933841385029064 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6023 0.10378964012928299 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.4464433049737E-5 2 0.0 0.0 0.0 0.0 3.4464433049737E-5 3 0.0 0.0 0.0 0.0 3.4464433049737E-5 4 0.0 0.0 0.0 0.0 5.1696649574605504E-5 5 0.0 3.4464433049737E-5 0.0 0.0 5.1696649574605504E-5 6 0.0 3.4464433049737E-5 0.0 0.0 6.8928866099474E-5 7 0.0 3.4464433049737E-5 0.0 0.0 6.8928866099474E-5 8 1.72322165248685E-5 3.4464433049737E-5 0.0 0.0 6.8928866099474E-5 9 1.72322165248685E-5 3.4464433049737E-5 0.0 0.0 1.0339329914921101E-4 10 3.4464433049737E-5 3.4464433049737E-5 0.0 0.0 1.0339329914921101E-4 11 5.1696649574605504E-5 3.4464433049737E-5 0.0 0.0 1.0339329914921101E-4 12 5.1696649574605504E-5 3.4464433049737E-5 0.0 0.0 1.206255156740795E-4 13 5.1696649574605504E-5 5.1696649574605504E-5 0.0 0.0 1.206255156740795E-4 14 1.0339329914921101E-4 5.1696649574605504E-5 0.0 0.0 1.550899487238165E-4 15 1.206255156740795E-4 5.1696649574605504E-5 0.0 5.1696649574605504E-5 1.550899487238165E-4 16 1.37857732198948E-4 5.1696649574605504E-5 0.0 1.0339329914921101E-4 2.240188148232905E-4 17 1.37857732198948E-4 6.8928866099474E-5 0.0 3.618765470222385E-4 2.240188148232905E-4 18 1.37857732198948E-4 6.8928866099474E-5 0.0 3.963409800719755E-4 2.929476809227645E-4 19 1.550899487238165E-4 6.8928866099474E-5 0.0 6.375920114201346E-4 2.929476809227645E-4 20 1.550899487238165E-4 8.61610826243425E-5 0.0 0.0011545585071661897 2.929476809227645E-4 21 1.550899487238165E-4 8.61610826243425E-5 0.0 0.0016370605698625075 3.10179897447633E-4 22 1.550899487238165E-4 8.61610826243425E-5 0.0 0.002722690210929223 3.2741211397250154E-4 23 1.550899487238165E-4 8.61610826243425E-5 0.0 0.0034636755214985685 3.4464433049737E-4 24 1.550899487238165E-4 8.61610826243425E-5 0.0 0.004790556193913443 3.4464433049737E-4 25 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.005738328102781211 3.618765470222385E-4 26 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.006841189960372795 4.1357319659684403E-4 27 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.010735670894993075 4.1357319659684403E-4 28 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.03187960057100673 4.1357319659684403E-4 29 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.08018150349021314 4.1357319659684403E-4 30 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.1557964696013361 4.1357319659684403E-4 31 1.550899487238165E-4 8.61610826243425E-5 1.72322165248685E-5 0.4110745252007381 4.1357319659684403E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 2930 0.0 17.99488 37 TCTATAC 515 0.0 15.446601 3 TCTTATA 4790 0.0 15.101253 37 GAGTACT 7915 0.0 14.024005 11 CTCTTAT 7735 0.0 13.728507 37 AGTACTT 8180 0.0 13.501834 12 GTACTTT 8400 0.0 13.12619 13 TAGACAG 960 0.0 12.718749 5 TACTTTT 8830 0.0 12.591733 14 TAGTACT 485 0.0 12.587629 4 TAACCCG 240 1.1314114E-9 12.333333 5 TTATACT 760 0.0 12.171053 4 ACTTTTT 9285 0.0 12.054389 15 TACTTAC 860 0.0 12.046512 31 GTATTAG 545 0.0 11.8807335 1 TCTACAC 1045 0.0 11.684212 3 GGGTAAG 2270 0.0 11.572687 1 TATACTG 720 0.0 11.562501 5 TATACAG 800 0.0 11.562499 5 TAAGACA 865 0.0 11.549133 4 >>END_MODULE