##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727289.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5287816 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.102932098998906 33.0 31.0 34.0 30.0 34.0 2 32.24289650018079 33.0 31.0 34.0 30.0 34.0 3 32.320908859158486 34.0 31.0 34.0 30.0 34.0 4 35.91258659529757 37.0 35.0 37.0 35.0 37.0 5 35.78526994887871 37.0 35.0 37.0 35.0 37.0 6 35.80646244120446 37.0 35.0 37.0 35.0 37.0 7 35.74389729143374 37.0 35.0 37.0 35.0 37.0 8 35.71288694614185 37.0 35.0 37.0 33.0 37.0 9 37.44616529773351 39.0 37.0 39.0 35.0 39.0 10 37.2830544784463 39.0 37.0 39.0 34.0 39.0 11 37.394286034158526 39.0 37.0 39.0 34.0 39.0 12 37.289996664029154 39.0 37.0 39.0 34.0 39.0 13 37.347446469393034 39.0 37.0 39.0 34.0 39.0 14 38.47130384264506 40.0 38.0 41.0 34.0 41.0 15 38.43931275218351 40.0 38.0 41.0 34.0 41.0 16 38.35110242111299 40.0 38.0 41.0 34.0 41.0 17 38.306606167839426 40.0 38.0 41.0 34.0 41.0 18 38.25728712950678 40.0 38.0 41.0 33.0 41.0 19 38.26362301562687 40.0 38.0 41.0 34.0 41.0 20 38.14136271004891 40.0 38.0 41.0 33.0 41.0 21 38.05212454442439 40.0 38.0 41.0 33.0 41.0 22 37.985010257543 40.0 37.0 41.0 33.0 41.0 23 37.85635600784899 40.0 37.0 41.0 33.0 41.0 24 37.73740727740905 40.0 37.0 41.0 32.0 41.0 25 37.64325195884275 40.0 37.0 41.0 32.0 41.0 26 37.2587682703029 39.0 37.0 41.0 31.0 41.0 27 37.038931195790475 39.0 36.0 41.0 31.0 41.0 28 36.8356869830569 39.0 36.0 40.0 30.0 41.0 29 36.79014530762795 39.0 36.0 40.0 30.0 41.0 30 36.70528550917808 39.0 36.0 40.0 30.0 41.0 31 36.48847841906753 39.0 36.0 40.0 30.0 41.0 32 36.360994028536545 39.0 35.0 40.0 30.0 41.0 33 36.17350546993315 39.0 35.0 40.0 29.0 41.0 34 36.01334029020677 39.0 35.0 40.0 28.0 41.0 35 35.84307358652419 38.0 35.0 40.0 27.0 41.0 36 35.662183215149696 38.0 35.0 40.0 26.0 41.0 37 35.42331408657185 38.0 34.0 40.0 26.0 41.0 38 35.29643032208382 38.0 34.0 40.0 25.0 41.0 39 35.11203037322025 38.0 34.0 40.0 24.0 41.0 40 34.97621475482505 38.0 34.0 40.0 24.0 41.0 41 34.806870927430154 38.0 33.0 40.0 24.0 41.0 42 34.589456024944894 38.0 33.0 40.0 23.0 41.0 43 31.006659271048765 35.0 27.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 7.0 10 23.0 11 36.0 12 35.0 13 40.0 14 66.0 15 127.0 16 190.0 17 415.0 18 805.0 19 1693.0 20 3194.0 21 5817.0 22 9785.0 23 15546.0 24 23103.0 25 32698.0 26 43908.0 27 57561.0 28 73654.0 29 93174.0 30 115186.0 31 143141.0 32 177866.0 33 221747.0 34 283189.0 35 369816.0 36 514496.0 37 797338.0 38 1387968.0 39 915192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.39867347880486 17.188003516007363 12.365747976102043 27.04757502908573 2 19.40273640383856 20.73402327161157 33.405492929406016 26.457747395143855 3 19.095331607605107 21.25075834711344 30.329175599150954 29.324734446130503 4 15.400479139213619 14.724056207704656 31.83036247857338 38.045102174508344 5 15.22588910052846 36.653620322643604 33.131542398600864 14.98894817822708 6 38.073677298907526 33.717984892061295 13.11615230181988 15.092185507211294 7 31.33639672787404 30.4508137196907 18.930102711592085 19.282686840843176 8 29.77219706585857 34.13721279257826 17.739554477689843 18.351035663873326 9 28.421412545368447 12.922802154991778 16.403709962676462 42.252075336963316 10 16.25542568046997 27.076660761267036 32.19663846094493 24.47127509731806 11 39.027190053511696 20.14890457610477 19.332121238711785 21.491784131671753 12 22.75812925411928 24.314594153805654 28.045075698549272 24.8822008935258 13 33.67367548341319 18.17215273753852 22.28422849811718 25.869943280931107 14 23.382716040043753 19.104560370481877 24.296212273649463 33.21651131582491 15 27.782888058132126 26.56467244699891 20.322586867621716 25.32985262724724 16 26.18307823116387 24.828530342205553 22.696515915077224 26.291875511553354 17 26.01436963767272 24.676331400336167 23.48338141871805 25.825917543273064 18 25.794997405356014 24.293035158560734 24.423334699997127 25.488632736086124 19 27.471814450427175 24.20159854276321 23.81728108542355 24.50930592138607 20 26.199493325788946 23.700257346322186 23.981564411469687 26.118684916419177 21 25.848894893468305 24.55340730464146 24.230646452145837 25.367051349744397 22 26.967976949273577 23.641764388170845 22.930903798468023 26.459354864087555 23 25.969190304655076 23.804742827662686 23.76792233315229 26.45814453452995 24 25.669520270750724 23.559915851837506 23.882582147336443 26.887981730075328 25 26.288471459672575 23.06708478509842 23.68253736514281 26.96190639008619 26 25.85216656555372 23.53069773986084 24.35714480231536 26.25999089227008 27 27.015690409802456 23.89595250666816 23.68155397237725 25.406803111152126 28 25.989557881741725 24.570011513259917 23.292338462609138 26.148092142389224 29 25.892296554948206 24.478934214049808 23.966492026197585 25.6622772048044 30 26.510131971309136 24.07267953347847 23.571584185228836 25.845604309983557 31 25.949295512551874 23.585332772547304 23.91210284170251 26.55326887319831 32 25.367051349744397 24.003823128490097 23.860285607517355 26.76883991424815 33 25.822418934395596 23.569579576899045 23.8465937543969 26.761407734308456 34 26.1282919072827 23.62508453395504 24.586388785086317 25.66023477367594 35 26.04545997818381 23.663361206214436 24.18119314287789 26.109985672723862 36 25.474676123374945 23.07523559821295 24.974810016082255 26.475278262329855 37 25.002628684507933 23.119185690273643 25.212488482957802 26.665697142260626 38 25.434546133980458 22.601675247398926 25.379173556719824 26.58460506190079 39 24.539450691930277 22.710264502395695 26.22180877700737 26.528476028666653 40 25.39212786526611 22.187912741290543 26.40965570662822 26.010303686815124 41 24.518251013272778 22.276966520771524 26.833081937798138 26.37170052815756 42 23.950398425361247 22.428976348647534 27.155105245719596 26.46551998027163 43 23.98018387931804 21.437716440965417 26.785860173652033 27.796239506064506 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 195.0 1 270.5 2 346.0 3 998.0 4 1650.0 5 1650.0 6 1936.0 7 2222.0 8 2196.5 9 2171.0 10 3154.5 11 4138.0 12 4138.0 13 9274.0 14 14410.0 15 27034.5 16 39659.0 17 27901.5 18 16144.0 19 16144.0 20 18565.0 21 20986.0 22 16660.5 23 12335.0 24 15808.0 25 19281.0 26 19281.0 27 24844.5 28 30408.0 29 36784.0 30 43160.0 31 52411.5 32 61663.0 33 61663.0 34 74694.0 35 87725.0 36 106383.0 37 125041.0 38 150318.5 39 175596.0 40 175596.0 41 202809.5 42 230023.0 43 262221.5 44 294420.0 45 335904.0 46 377388.0 47 377388.0 48 423600.0 49 469812.0 50 499492.5 51 529173.0 52 537931.5 53 546690.0 54 546690.0 55 514896.5 56 483103.0 57 451101.5 58 419100.0 59 394194.5 60 369289.0 61 369289.0 62 325684.5 63 282080.0 64 240875.5 65 199671.0 66 169659.5 67 139648.0 68 139648.0 69 116367.5 70 93087.0 71 79576.5 72 66066.0 73 55400.0 74 44734.0 75 44734.0 76 37769.5 77 30805.0 78 26063.5 79 21322.0 80 17249.0 81 13176.0 82 13176.0 83 10874.5 84 8573.0 85 6895.5 86 5218.0 87 4546.5 88 3875.0 89 3875.0 90 2923.5 91 1972.0 92 1410.0 93 848.0 94 615.5 95 383.0 96 383.0 97 273.5 98 164.0 99 115.0 100 66.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5287816.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.44297324667836 #Duplication Level Percentage of deduplicated Percentage of total 1 81.44284920411604 44.339908603529494 2 9.591647616630764 10.4439562916759 3 3.29846963894045 5.387354829234472 4 1.5391836630955547 3.3519093996654274 5 0.9050323631449376 2.4636326367038963 6 0.6065613633684247 1.9813802447001538 7 0.4375496602030334 1.6675053111168867 8 0.32888751857973175 1.4324491500162213 9 0.23712304876550658 1.1618715420100154 >10 1.449996292500231 14.778411965643897 >50 0.10644736705884318 3.94773666567143 >100 0.05066139019737723 5.126147022911227 >500 0.0037504029340232068 1.3938512519201993 >1k 0.0017015670337630628 1.5577614307383632 >5k 1.0417757349466772E-4 0.429274856135271 >10k+ 3.472585783155591E-5 0.5368487983271891 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28396 0.5370080955918285 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 8203 0.15513020876671957 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7874 0.14890835838463365 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6629 0.12536366620926295 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.673419801294145E-5 2 1.891139933764715E-5 0.0 0.0 0.0 5.673419801294145E-5 3 1.891139933764715E-5 0.0 0.0 0.0 5.673419801294145E-5 4 1.891139933764715E-5 0.0 0.0 0.0 7.56455973505886E-5 5 1.891139933764715E-5 0.0 0.0 0.0 7.56455973505886E-5 6 3.78227986752943E-5 0.0 0.0 0.0 1.134683960258829E-4 7 7.56455973505886E-5 0.0 0.0 0.0 1.134683960258829E-4 8 7.56455973505886E-5 0.0 0.0 0.0 1.134683960258829E-4 9 9.455699668823575E-5 0.0 0.0 1.891139933764715E-5 1.512911947011772E-4 10 1.512911947011772E-4 0.0 0.0 3.78227986752943E-5 1.512911947011772E-4 11 1.7020259403882434E-4 0.0 0.0 5.673419801294145E-5 1.512911947011772E-4 12 1.7020259403882434E-4 0.0 0.0 7.56455973505886E-5 1.512911947011772E-4 13 1.7020259403882434E-4 0.0 0.0 1.134683960258829E-4 1.512911947011772E-4 14 2.0802539271411866E-4 0.0 0.0 1.3237979536353004E-4 2.269367920517658E-4 15 2.0802539271411866E-4 0.0 0.0 2.647595907270601E-4 2.269367920517658E-4 16 2.269367920517658E-4 0.0 0.0 8.510129701941217E-4 3.2149378874000154E-4 17 2.269367920517658E-4 0.0 0.0 0.0015696461450247134 3.2149378874000154E-4 18 2.4584819138941295E-4 0.0 0.0 0.0017587601384011849 4.160507854282373E-4 19 3.025823894023544E-4 0.0 0.0 0.0025530389105823652 4.160507854282373E-4 20 3.404051880776487E-4 0.0 0.0 0.0035931658741529585 4.160507854282373E-4 21 3.5931658741529586E-4 0.0 0.0 0.005805799596657675 4.538735841035316E-4 22 3.5931658741529586E-4 0.0 0.0 0.009871750454251812 4.727849834411787E-4 23 3.9713938609059013E-4 0.0 0.0 0.012273498170133 7.186331748305917E-4 24 3.9713938609059013E-4 0.0 0.0 0.016528563021103608 7.186331748305917E-4 25 3.9713938609059013E-4 0.0 0.0 0.019724589509165977 7.186331748305917E-4 26 3.9713938609059013E-4 0.0 0.0 0.022901704597890697 7.186331748305917E-4 27 3.9713938609059013E-4 0.0 0.0 0.028688592795210726 7.186331748305917E-4 28 3.9713938609059013E-4 0.0 0.0 0.057887793372537924 7.186331748305917E-4 29 3.9713938609059013E-4 0.0 0.0 0.13226632696750418 7.375445741682388E-4 30 3.9713938609059013E-4 0.0 0.0 0.24026932858480704 7.375445741682388E-4 31 4.160507854282373E-4 0.0 0.0 0.5867639872491781 7.375445741682388E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 3675 0.0 19.431293 37 TACTTAC 995 0.0 17.849247 31 TCGTTAC 1025 0.0 17.326828 23 GTACTTA 1120 0.0 15.857142 30 CTCGTTA 1230 0.0 15.642276 22 AGTGTAC 1360 0.0 14.963236 27 CGTTACG 945 0.0 14.878307 24 GAGTACT 7455 0.0 14.814889 11 AGTACTT 7710 0.0 14.3249035 12 GTTACGG 1875 0.0 13.813333 25 GTACTTT 7955 0.0 13.790698 13 TACTTTT 8020 0.0 13.771196 14 TCTTATA 5995 0.0 13.701417 37 TACGGAT 2305 0.0 13.563992 27 TAATACT 520 0.0 13.519231 4 GGGTAAG 4015 0.0 13.270236 1 ATAATAC 420 0.0 13.214287 3 CCGATTT 1080 0.0 13.189814 21 GTAAGAG 4210 0.0 13.1828985 3 TTACATA 660 0.0 13.174243 34 >>END_MODULE