##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727288.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6233127 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1364756405573 33.0 31.0 34.0 30.0 34.0 2 32.271256786521434 33.0 31.0 34.0 30.0 34.0 3 32.34747807962199 34.0 31.0 34.0 30.0 34.0 4 35.92814345030993 37.0 35.0 37.0 35.0 37.0 5 35.809209566883524 37.0 35.0 37.0 35.0 37.0 6 35.82898086305637 37.0 35.0 37.0 35.0 37.0 7 35.76123220335475 37.0 35.0 37.0 35.0 37.0 8 35.72651977089509 37.0 35.0 37.0 35.0 37.0 9 37.46374781068956 39.0 37.0 39.0 35.0 39.0 10 37.30643768368589 39.0 37.0 39.0 34.0 39.0 11 37.41073172422124 39.0 37.0 39.0 35.0 39.0 12 37.30785061815683 39.0 37.0 39.0 34.0 39.0 13 37.36333480771369 39.0 37.0 39.0 34.0 39.0 14 38.489526204102695 40.0 38.0 41.0 34.0 41.0 15 38.453643251613514 40.0 38.0 41.0 34.0 41.0 16 38.36916911848579 40.0 38.0 41.0 34.0 41.0 17 38.329892845116106 40.0 38.0 41.0 34.0 41.0 18 38.292745679656456 40.0 38.0 41.0 34.0 41.0 19 38.29076417021505 40.0 38.0 41.0 34.0 41.0 20 38.17720495667744 40.0 38.0 41.0 33.0 41.0 21 38.0934830944404 40.0 38.0 41.0 33.0 41.0 22 38.00901954989847 40.0 37.0 41.0 33.0 41.0 23 37.88685759170317 40.0 37.0 41.0 33.0 41.0 24 37.76543843884458 40.0 37.0 41.0 32.0 41.0 25 37.677117119545294 40.0 37.0 41.0 32.0 41.0 26 37.290141850150015 39.0 37.0 41.0 31.0 41.0 27 37.06105009572242 39.0 36.0 41.0 31.0 41.0 28 36.88861353218056 39.0 36.0 40.0 30.0 41.0 29 36.82216293683732 39.0 36.0 40.0 30.0 41.0 30 36.722836226503965 39.0 36.0 40.0 30.0 41.0 31 36.50535164773636 39.0 35.0 40.0 30.0 41.0 32 36.38144032682151 39.0 35.0 40.0 30.0 41.0 33 36.190184637662604 39.0 35.0 40.0 29.0 41.0 34 36.03152125730793 39.0 35.0 40.0 28.0 41.0 35 35.85800834797686 38.0 35.0 40.0 27.0 41.0 36 35.68979069414116 38.0 35.0 40.0 27.0 41.0 37 35.43301829081936 38.0 34.0 40.0 26.0 41.0 38 35.298329233465 38.0 34.0 40.0 25.0 41.0 39 35.12467867251863 38.0 34.0 40.0 25.0 41.0 40 34.96500825348176 38.0 34.0 40.0 24.0 41.0 41 34.797169703104075 38.0 33.0 40.0 24.0 41.0 42 34.551718423192725 38.0 33.0 40.0 23.0 41.0 43 30.998662629527683 35.0 27.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 13.0 12 27.0 13 26.0 14 82.0 15 147.0 16 289.0 17 553.0 18 1039.0 19 2021.0 20 3735.0 21 6736.0 22 11492.0 23 18055.0 24 26827.0 25 38188.0 26 51229.0 27 67179.0 28 86427.0 29 108180.0 30 134323.0 31 166532.0 32 207737.0 33 259517.0 34 332320.0 35 434969.0 36 606475.0 37 949670.0 38 1612684.0 39 1106647.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.84694873054889 16.921137656909604 12.549511665653531 26.682401946887975 2 19.11121015182267 20.926639229394812 33.16792678859263 26.79422383018989 3 19.2784616774213 21.207573662465084 30.09649891619407 29.417465743919546 4 15.168020802399823 14.541481346361143 31.590901324487692 38.69959652675134 5 15.458452876060443 36.2775858730297 32.98812939316013 15.275831857749731 6 38.39641002020334 33.53488545957751 12.86729758594683 15.201406934272315 7 31.573045118445364 29.76210816817947 18.84449009301431 19.820356620360855 8 30.16413751877669 33.542313512944624 17.771208576369453 18.52234039190923 9 27.64976551897627 13.080449026628207 16.510926217290294 42.75885923710523 10 16.291132845520394 27.14887728101802 32.0692968392911 24.490693034170487 11 38.98439739796735 19.935162559659062 19.1810627314348 21.899377310938796 12 22.956631559087437 24.59547190358868 28.09268927137214 24.355207265951744 13 34.0426562783014 17.860425433333862 22.336429211212927 25.760489077151803 14 23.504831523567546 18.73781811280277 24.765081796023086 32.9922685676066 15 27.68119436680819 26.28618027516526 20.570301230826836 25.46232412719972 16 26.482486238448217 24.13456359865602 22.797305429521973 26.58564473337379 17 25.95016915265805 24.65409416493519 24.22323498301896 25.172501699387805 18 25.99961463965037 23.254459599491557 24.946226829647465 25.799698931210614 19 26.911019140152288 24.06658808652543 24.28070212591529 24.74169064740699 20 26.331951843753544 23.690019471767542 24.285290513092388 25.69273817138653 21 25.868316175813522 24.467462318672474 23.98364416447796 25.68057734103605 22 26.567820613955085 23.931615704284543 23.271417380072634 26.229146301687738 23 25.90757415980775 23.488387128964323 23.728186510558825 26.875852200669105 24 25.885177696523755 23.583363534867814 23.863046589617056 26.668412178991378 25 26.18574914324704 23.136332694649088 23.907406346766237 26.770511815337635 26 25.947489919586108 23.30672870936209 24.48265533495467 26.263126036097127 27 26.65735833715565 23.686233250180848 24.25615585884902 25.400252553814482 28 26.14700454523067 23.975798985003834 24.125579344043526 25.75161712572197 29 25.747750687576236 24.075476081267073 24.39350265123749 25.783270579919197 30 25.743980509301352 24.281664724623774 24.294467287446576 25.679887478628306 31 25.535096589560908 23.43536398343881 24.118424026977152 26.911115400023135 32 25.128944107829028 23.845623552993544 24.35175795391302 26.673674385264412 33 25.821469705334092 23.567737349166798 24.23762583371075 26.373167111788355 34 25.87909728134851 23.591353104148208 24.57244975114417 25.95709986335911 35 25.655228908379375 23.727705211204587 24.765049709399474 25.85201617101657 36 25.31223894523567 23.251764323107807 25.0077048004958 26.428291931160715 37 24.83856016410383 22.934748481781295 25.285205964839157 26.94148538927572 38 24.83068289800609 22.744394587179116 25.874316374429718 26.550606140385074 39 24.531362829603825 22.425982977725305 26.289773977010256 26.752880215660614 40 24.799655132969374 22.394602259828815 26.916056740060007 25.889685867141804 41 24.338409918488747 22.025381481879 27.265608417733183 26.370600181899068 42 23.66804013459055 22.211724548529173 27.687226652048004 26.433008664832276 43 23.803301296443983 21.264094249964746 27.594945522528256 27.337658931063014 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 247.0 1 367.5 2 488.0 3 1727.5 4 2967.0 5 2967.0 6 3495.5 7 4024.0 8 3948.0 9 3872.0 10 5492.5 11 7113.0 12 7113.0 13 15978.5 14 24844.0 15 47650.0 16 70456.0 17 49152.0 18 27848.0 19 27848.0 20 30729.5 21 33611.0 22 24848.5 23 16086.0 24 20007.5 25 23929.0 26 23929.0 27 30257.0 28 36585.0 29 43775.0 30 50965.0 31 59850.5 32 68736.0 33 68736.0 34 82032.5 35 95329.0 36 115829.5 37 136330.0 38 165374.0 39 194418.0 40 194418.0 41 226359.0 42 258300.0 43 295894.5 44 333489.0 45 379168.0 46 424847.0 47 424847.0 48 478137.0 49 531427.0 50 563863.0 51 596299.0 52 620962.0 53 645625.0 54 645625.0 55 614175.0 56 582725.0 57 543286.5 58 503848.0 59 473236.0 60 442624.0 61 442624.0 62 394407.5 63 346191.0 64 297447.5 65 248704.0 66 211144.5 67 173585.0 68 173585.0 69 143968.5 70 114352.0 71 97037.0 72 79722.0 73 66412.0 74 53102.0 75 53102.0 76 44261.5 77 35421.0 78 30115.5 79 24810.0 80 20018.5 81 15227.0 82 15227.0 83 12495.5 84 9764.0 85 7992.0 86 6220.0 87 5447.0 88 4674.0 89 4674.0 90 3488.5 91 2303.0 92 1729.0 93 1155.0 94 864.0 95 573.0 96 573.0 97 382.0 98 191.0 99 146.0 100 101.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 6233127.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.735622017976205 #Duplication Level Percentage of deduplicated Percentage of total 1 82.7457979545229 46.11888518369117 2 9.296938396013378 10.36341288729223 3 2.9559347833429275 4.942525913825693 4 1.3924447850470243 3.104351048811323 5 0.8059523628114326 2.2460128129076415 6 0.5181180679865506 1.7326579678789484 7 0.37115013494794347 1.4480398543365607 8 0.2688063021617561 1.1985669162670032 9 0.20198842503288886 1.0132155458675476 >10 1.2808678095813733 13.441572566434271 >50 0.10460782548090956 4.013797595150705 >100 0.051558018274795885 5.200299137089381 >500 0.003736808129043069 1.4029567270556609 >1k 0.001839628858896476 1.7956707711944342 >5k 1.4372100452067458E-4 0.5048141213841948 >10k+ 1.1497680361653966E-4 1.4732209508132783 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 51529 0.8266958141555595 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14448 0.23179376900230014 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13992 0.22447801881784216 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11988 0.1923272219545663 No Hit GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 8404 0.13482799243461588 No Hit CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT 6303 0.10112099432596192 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.2086623616043764E-5 2 0.0 0.0 0.0 0.0 3.2086623616043764E-5 3 1.6043311808021882E-5 0.0 0.0 0.0 3.2086623616043764E-5 4 1.6043311808021882E-5 0.0 0.0 0.0 3.2086623616043764E-5 5 1.6043311808021882E-5 0.0 0.0 0.0 3.2086623616043764E-5 6 1.6043311808021882E-5 0.0 0.0 0.0 6.417324723208753E-5 7 4.812993542406564E-5 0.0 0.0 0.0 6.417324723208753E-5 8 6.417324723208753E-5 0.0 0.0 0.0 6.417324723208753E-5 9 1.4438980627219693E-4 0.0 0.0 0.0 1.4438980627219693E-4 10 1.9251974169626256E-4 0.0 0.0 1.6043311808021882E-5 1.4438980627219693E-4 11 3.208662361604376E-4 0.0 0.0 1.6043311808021882E-5 1.4438980627219693E-4 12 3.208662361604376E-4 0.0 0.0 8.02165590401094E-5 1.4438980627219693E-4 13 3.369095479684595E-4 0.0 0.0 1.4438980627219693E-4 1.604331180802188E-4 14 3.6899617158450324E-4 0.0 0.0 2.406496771203282E-4 2.406496771203282E-4 15 3.6899617158450324E-4 0.0 0.0 3.5295285977648137E-4 2.406496771203282E-4 16 4.01082795200547E-4 0.0 0.0 9.786420202893347E-4 3.0482292435241574E-4 17 4.01082795200547E-4 0.0 0.0 0.0018610241697305382 3.208662361604376E-4 18 4.01082795200547E-4 0.0 0.0 0.002454626706627348 3.6899617158450324E-4 19 4.4921273062461267E-4 0.0 0.0 0.0038503948339252514 3.850394833925251E-4 20 5.45472601472744E-4 1.6043311808021882E-5 0.0 0.005567029197383592 4.01082795200547E-4 21 5.936025368968096E-4 1.6043311808021882E-5 0.0 0.009273034225036647 4.01082795200547E-4 22 5.936025368968096E-4 1.6043311808021882E-5 0.0 0.015257189529428809 4.01082795200547E-4 23 5.936025368968096E-4 1.6043311808021882E-5 0.0 0.019011324492505928 4.973426660486782E-4 24 5.936025368968096E-4 1.6043311808021882E-5 0.0 0.02542864921571468 4.973426660486782E-4 25 6.096458487048315E-4 1.6043311808021882E-5 0.0 0.030177469510889156 4.973426660486782E-4 26 6.096458487048315E-4 1.6043311808021882E-5 0.0 0.03622579806251341 5.294292896647221E-4 27 6.096458487048315E-4 1.6043311808021882E-5 0.0 0.044407887084604566 5.294292896647221E-4 28 6.417324723208752E-4 1.6043311808021882E-5 0.0 0.07960691319140457 5.294292896647221E-4 29 6.577757841288971E-4 1.6043311808021882E-5 0.0 0.16882377015581426 5.294292896647221E-4 30 6.73819095936919E-4 3.2086623616043764E-5 0.0 0.29648040221224436 5.294292896647221E-4 31 6.73819095936919E-4 3.2086623616043764E-5 0.0 0.6594282452451233 5.45472601472744E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 4290 0.0 18.198135 37 TAGATCG 225 0.0 16.444445 5 TATACTG 585 0.0 15.811965 5 GAGTACT 13630 0.0 15.473221 11 TATACCG 255 0.0 15.235294 5 AGTACTT 13835 0.0 15.203831 12 TAGTACT 345 0.0 15.014493 4 TAATACT 440 0.0 14.715909 4 GTACTTT 14395 0.0 14.612365 13 TACTTTT 14580 0.0 14.439643 14 TCTTATA 7290 0.0 14.312757 37 TATACAC 1730 0.0 13.794799 37 AGTCGGT 960 0.0 13.682292 11 ACTTTTT 15505 0.0 13.661721 15 TATAGCG 110 2.4590944E-4 13.454545 3 CTAATCG 595 0.0 13.369748 19 TAGTCCC 1365 0.0 13.282051 5 TCGGTCG 665 0.0 13.075189 16 ATAATAC 355 0.0 13.028169 3 CTACTCG 1330 0.0 12.796993 14 >>END_MODULE