##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727287.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1089576 Sequences flagged as poor quality 0 Sequence length 43 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05568129253948 33.0 31.0 34.0 30.0 34.0 2 32.19742174937774 33.0 31.0 34.0 30.0 34.0 3 32.26930934602084 34.0 31.0 34.0 30.0 34.0 4 35.877444987775064 37.0 35.0 37.0 35.0 37.0 5 35.74083221363173 37.0 35.0 37.0 35.0 37.0 6 35.75417960748034 37.0 35.0 37.0 35.0 37.0 7 35.69056403591856 37.0 35.0 37.0 33.0 37.0 8 35.64867434671836 37.0 35.0 37.0 33.0 37.0 9 37.390864886891784 39.0 37.0 39.0 34.0 39.0 10 37.217980205144016 39.0 37.0 39.0 34.0 39.0 11 37.32170954573155 39.0 37.0 39.0 34.0 39.0 12 37.21051399810568 39.0 37.0 39.0 34.0 39.0 13 37.261063936797434 39.0 37.0 39.0 34.0 39.0 14 38.372248470964855 40.0 38.0 41.0 34.0 41.0 15 38.32997147514262 40.0 38.0 41.0 34.0 41.0 16 38.22056286114966 40.0 38.0 41.0 33.0 41.0 17 38.16033851700111 40.0 38.0 41.0 33.0 41.0 18 38.09160535841465 40.0 37.0 41.0 33.0 41.0 19 38.08265600563889 40.0 37.0 41.0 33.0 41.0 20 37.94317789672313 40.0 37.0 41.0 33.0 41.0 21 37.84443948838815 40.0 37.0 41.0 33.0 41.0 22 37.759985535657904 40.0 37.0 41.0 32.0 41.0 23 37.59938728459511 39.0 37.0 41.0 32.0 41.0 24 37.46844644155158 39.0 37.0 41.0 32.0 41.0 25 37.35813105281321 39.0 37.0 41.0 31.0 41.0 26 36.9277306034641 39.0 36.0 40.0 30.0 41.0 27 36.684319404979554 39.0 36.0 40.0 30.0 41.0 28 36.468165598361196 39.0 36.0 40.0 30.0 41.0 29 36.416239895151875 39.0 36.0 40.0 30.0 41.0 30 36.32304309199175 39.0 35.0 40.0 30.0 41.0 31 36.099588280211755 39.0 35.0 40.0 28.0 41.0 32 35.97420648031895 39.0 35.0 40.0 27.0 41.0 33 35.75884839607333 38.0 35.0 40.0 27.0 41.0 34 35.5846108945131 38.0 35.0 40.0 26.0 41.0 35 35.41290373503087 38.0 34.0 40.0 25.0 41.0 36 35.21462018252972 38.0 34.0 40.0 25.0 41.0 37 34.95566348744833 38.0 34.0 40.0 24.0 41.0 38 34.8222693965359 38.0 33.0 40.0 24.0 41.0 39 34.63349780097946 38.0 33.0 40.0 23.0 41.0 40 34.48743823285388 38.0 33.0 40.0 23.0 41.0 41 34.30353550371888 38.0 33.0 40.0 22.0 41.0 42 34.07366535239396 38.0 33.0 40.0 21.0 41.0 43 30.300072688825747 34.0 26.0 38.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 5.0 12 5.0 13 10.0 14 19.0 15 28.0 16 53.0 17 112.0 18 234.0 19 430.0 20 848.0 21 1481.0 22 2613.0 23 4068.0 24 5949.0 25 8126.0 26 10819.0 27 13807.0 28 17546.0 29 21703.0 30 26651.0 31 32521.0 32 39713.0 33 48477.0 34 61472.0 35 78891.0 36 108524.0 37 162823.0 38 274593.0 39 168051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.67673663883932 15.294114407806338 11.379380603096985 28.64976835025735 2 20.71291952098798 18.988395485950498 31.410567046263864 28.888117946797653 3 20.153068716638398 19.686189857339002 28.640682247039216 31.520059178983384 4 16.69117161170951 13.653935108702836 29.499181332922163 40.15571194666549 5 16.6850224307437 34.75361057879395 32.27383863080684 16.287528359655497 6 40.91224476310051 31.09420545239616 12.153902068327497 15.839647716175834 7 33.09929734135113 28.47685705265167 17.90549718422579 20.518348421771403 8 31.289143666894276 32.26007180774907 17.12941547904873 19.32136904630792 9 28.730900827477846 12.20502287128204 15.23207192522596 43.832004376014154 10 17.284980579601605 25.50414106037578 31.146152264734173 26.064726095288442 11 40.74282106066947 18.71305902479497 17.718176611819644 22.825943302715917 12 24.149485671490563 22.954708987716323 26.2402071998649 26.655598140928216 13 35.49316431345771 16.747523807426006 20.685569432513198 27.073742446603084 14 24.68125215680228 17.790039428181238 22.44607076514167 35.08263764987481 15 29.808751294081365 24.43418357232538 19.018590717857222 26.73847441573603 16 28.258607017775724 22.980223499783403 21.254965234182837 27.506204248258037 17 27.75400706329802 23.0588779488535 21.86813953317621 27.318975454672277 18 27.5473211597906 22.41560019677379 22.806302635153493 27.23077600828212 19 29.087094429392717 22.70240901047747 21.907604425941834 26.302892134187978 20 28.19280160355955 21.855290498322283 22.07097072622745 27.880937171890718 21 27.67232391315521 23.109815194167272 21.93440384149431 27.283457051183213 22 28.865081462880976 22.167522045272655 20.614073731433145 28.353322760413224 23 27.89268486090002 22.14457734017636 21.431914799885458 28.530822999038158 24 27.583114899740817 21.863458813336564 21.796643832096155 28.756782454826464 25 28.31826325102609 21.303332672525826 21.46486339640374 28.91354068004435 26 27.870657944007576 21.684765450046623 22.3158366190151 28.128739986930697 27 29.220173718951227 21.794165803945756 21.830877332099828 27.154783145003194 28 28.058712746976806 22.725537273214535 21.290024743569976 27.925725236238684 29 27.92122807403981 22.470759267825283 22.028844247670655 27.579168410464256 30 28.26154394002805 22.37411616995969 21.786181046572246 27.578158843440015 31 27.79631709949558 21.804812147110436 21.75433379589859 28.644536957495394 32 27.158362518998214 22.03389208279184 21.870892897787762 28.936852500422184 33 27.79328839842287 22.00764334016168 21.820965219498227 28.378103041917225 34 28.162698150473215 21.83610872486178 22.37549285226547 27.625700272399538 35 27.802558059281772 22.048576694053466 22.494162867023505 27.654702379641254 36 27.289973347430564 21.38281313097939 23.00234219549623 28.32487132609382 37 26.735904608765242 21.27469768056565 23.403232082938686 28.58616562773042 38 27.245001725441824 20.860591642987732 23.402497852375603 28.49190877919484 39 26.150998186450508 20.898312738166037 24.37544512727887 28.575243948104585 40 27.187915299162242 20.322308861428663 24.738246804261475 27.751529035147616 41 26.250119312466502 20.412710999508064 25.14271606569895 28.19445362232648 42 25.43943699200423 20.2967025705412 26.046553888852173 28.217306548602394 43 25.77433790758974 19.16286702350272 25.4978083217692 29.564986747138338 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 9.0 1 13.5 2 18.0 3 74.0 4 130.0 5 130.0 6 166.5 7 203.0 8 174.5 9 146.0 10 208.5 11 271.0 12 271.0 13 612.0 14 953.0 15 1839.5 16 2726.0 17 1884.0 18 1042.0 19 1042.0 20 1221.0 21 1400.0 22 1128.5 23 857.0 24 1093.0 25 1329.0 26 1329.0 27 1653.5 28 1978.0 29 2487.0 30 2996.0 31 3733.0 32 4470.0 33 4470.0 34 5708.5 35 6947.0 36 8815.0 37 10683.0 38 14117.5 39 17552.0 40 17552.0 41 22002.5 42 26453.0 43 32978.0 44 39503.0 45 49011.5 46 58520.0 47 58520.0 48 72425.0 49 86330.0 50 98354.0 51 110378.0 52 118347.5 53 126317.0 54 126317.0 55 122790.0 56 119263.0 57 113544.0 58 107825.0 59 103547.0 60 99269.0 61 99269.0 62 89263.5 63 79258.0 64 68176.0 65 57094.0 66 49211.5 67 41329.0 68 41329.0 69 34508.0 70 27687.0 71 23506.0 72 19325.0 73 16188.0 74 13051.0 75 13051.0 76 10861.5 77 8672.0 78 7359.5 79 6047.0 80 4869.5 81 3692.0 82 3692.0 83 3045.5 84 2399.0 85 1954.5 86 1510.0 87 1266.5 88 1023.0 89 1023.0 90 768.5 91 514.0 92 374.5 93 235.0 94 179.5 95 124.0 96 124.0 97 77.5 98 31.0 99 24.0 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1089576.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.0408655590639 #Duplication Level Percentage of deduplicated Percentage of total 1 86.36401891020951 57.89918580899808 2 7.476731985327813 10.024931676990297 3 2.3545286695020544 4.7354891996114645 4 1.1540561588229934 3.0947569516504796 5 0.6670376727719467 2.235939147156747 6 0.41324937337805406 1.662275740980331 7 0.30305099300825444 1.4221760615865042 8 0.2197041022376444 1.1783322544711 9 0.1587165377985862 0.9576444665299592 >10 0.8129574257016505 9.470853985976024 >50 0.04744826806542013 2.1963831830232436 >100 0.025622511133489567 3.2974461083481206 >500 0.0019182613616948673 0.843444760487915 >1k 9.591306808474336E-4 0.9811406541898736 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 1982 0.1819056220034215 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 1977 0.18144672790149563 No Hit GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG 1501 0.13776000939815122 No Hit CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT 1488 0.1365668847331439 No Hit GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG 1380 0.12665477213154475 No Hit TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG 1335 0.12252472521421176 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.177882038517735E-5 2 0.0 0.0 0.0 0.0 9.177882038517735E-5 3 0.0 0.0 0.0 0.0 9.177882038517735E-5 4 0.0 0.0 0.0 0.0 9.177882038517735E-5 5 0.0 0.0 0.0 0.0 9.177882038517735E-5 6 0.0 0.0 0.0 0.0 9.177882038517735E-5 7 0.0 0.0 0.0 0.0 9.177882038517735E-5 8 0.0 0.0 0.0 0.0 9.177882038517735E-5 9 9.177882038517735E-5 0.0 0.0 0.0 1.835576407703547E-4 10 9.177882038517735E-5 0.0 0.0 0.0 1.835576407703547E-4 11 2.7533646115553205E-4 0.0 0.0 0.0 1.835576407703547E-4 12 2.7533646115553205E-4 0.0 0.0 0.0 2.7533646115553205E-4 13 3.671152815407094E-4 0.0 0.0 0.0 2.7533646115553205E-4 14 3.671152815407094E-4 0.0 0.0 0.0 4.588941019258868E-4 15 3.671152815407094E-4 0.0 0.0 0.0 4.588941019258868E-4 16 3.671152815407094E-4 0.0 0.0 4.588941019258868E-4 5.506729223110641E-4 17 3.671152815407094E-4 0.0 0.0 8.260093834665962E-4 5.506729223110641E-4 18 3.671152815407094E-4 0.0 0.0 9.177882038517736E-4 5.506729223110641E-4 19 4.588941019258868E-4 0.0 0.0 0.0013766823057776603 5.506729223110641E-4 20 4.588941019258868E-4 0.0 0.0 0.0022026916892442564 6.424517426962415E-4 21 5.506729223110641E-4 0.0 0.0 0.0032122587134812072 6.424517426962415E-4 22 6.424517426962415E-4 0.0 0.0 0.0072505268104290106 6.424517426962415E-4 23 6.424517426962415E-4 0.0 0.0 0.009820333781213976 0.0010095670242369508 24 6.424517426962415E-4 0.0 0.0 0.013124371315080362 0.0010095670242369508 25 6.424517426962415E-4 0.0 0.0 0.014868168902398731 0.0011013458446221282 26 6.424517426962415E-4 0.0 0.0 0.01762153351395405 0.0011013458446221282 27 6.424517426962415E-4 0.0 0.0 0.022761147455523982 0.0011013458446221282 28 6.424517426962415E-4 0.0 0.0 0.051763254697240024 0.0011013458446221282 29 6.424517426962415E-4 0.0 0.0 0.1365668847331439 0.0011931246650073056 30 6.424517426962415E-4 0.0 0.0 0.2491794973457565 0.0011931246650073056 31 6.424517426962415E-4 0.0 0.0 0.5357129745882803 0.0011931246650073056 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACCG 35 8.869097E-4 26.428572 5 TACTTAC 85 1.9772415E-9 23.941177 31 CTACTAT 50 2.7019772E-4 22.2 1 TCTATAC 60 3.7260572E-5 21.583334 3 TAATCGA 60 3.7260572E-5 21.583334 20 TAGGACG 55 5.142859E-4 20.181818 4 GTGTACG 65 6.90171E-5 19.923077 1 CTAGGTA 65 6.90171E-5 19.923077 4 TGATATG 110 3.8509825E-8 18.5 33 TAAACGT 50 0.007034653 18.5 4 GTCTAGT 50 0.007034653 18.5 1 ACTAATC 70 1.2191232E-4 18.5 18 ATTCTAG 60 9.236394E-4 18.5 1 GGTGATT 230 0.0 17.695652 15 GTAAGTA 95 3.6060392E-6 17.526316 2 CTAATCG 75 2.0671412E-4 17.266668 19 GACTAAT 75 2.0671412E-4 17.266668 17 CGGTGAT 215 0.0 17.209303 14 TATACAC 205 0.0 17.146341 37 GTATAGA 65 0.0015798628 17.076923 1 >>END_MODULE